Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Amnibacterium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Amnibacterium |
| Species | Amnibacterium setariae |
| Strain | strain DD4a |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
456377 bp
Thymine Count
452969 bp
Guanine Count
1283414 bp
Cytosine Count
1289945 bp
Genome Length
3482706 bp
Protein-coding Genes
3370 genes
Non-Coding Genes
50 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| o-succinylbenzoate--coa ligase | D1781_00045 | Not Available | - | 8232 - 9362 | 38137.9 |
| naphthoate synthase | D1781_00050 | Not Available | - | 9376 - 10266 | 32343.0 |
| o-succinylbenzoate synthase | D1781_00055 | Not Available | + | 10265 - 11269 | 35746.8 |
| c-type cytochrome biogenesis protein ccsb | D1781_00060 | Not Available | - | 11606 - 12556 | 34010.9 |
| cytochrome c biogenesis protein resb | D1781_00065 | Not Available | - | 12682 - 14283 | 57462.0 |
| cytochrome c biogenesis protein ccda | D1781_00070 | Not Available | - | 14267 - 14986 | 24022.3 |
| tlpa family protein disulfide reductase | D1781_00075 | Not Available | - | 14983 - 15570 | 20177.9 |
| histidine phosphatase family protein | D1781_00080 | Not Available | - | 15570 - 16205 | 23415.1 |
| aspartate--trna(asn) ligase | D1781_00085 | Not Available | + | 16323 - 17633 | 48910.0 |
| ai-2e family transporter | D1781_00090 | Not Available | + | 17692 - 18903 | 41288.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.