Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase | DW150_19395 | Not Available | Positive | 4635990 - 4638392 | 89869.9 |
| glycoside hydrolase family 127 protein | DW150_19400 | Not Available | Positive | 4638460 - 4640865 | 89574.8 |
| s9 family peptidase | DW150_19405 | Not Available | Positive | 4640877 - 4643120 | 85788.0 |
| pectate lyase | DW150_19410 | Not Available | Positive | 4643360 - 4645501 | 81723.3 |
| duf1593 domain-containing protein | DW150_19415 | Not Available | Positive | 4645518 - 4646873 | 51298.6 |
| aaa family atpase | DW150_19420 | Not Available | Negative | 4647006 - 4648733 | 67960.9 |
| l-aspartate oxidase | DW150_19425 | Not Available | Negative | 4648984 - 4650564 | 58995.7 |
| orf6n domain-containing protein | DW150_19430 | Not Available | Positive | 4650720 - 4651280 | 21436.9 |
| hypothetical protein | DW150_19435 | Not Available | Positive | 4651356 - 4651766 | 15494.5 |
| hypothetical protein | DW150_19440 | Not Available | Positive | 4651770 - 4652183 | 15716.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

