Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| precorrin-3b c(17)-methyltransferase | DW150_01610 | Not Available | Negative | 438922 - 440328 | 51762.8 |
| flavin reductase family protein | DW150_01615 | Not Available | Negative | 441007 - 441567 | 20230.2 |
| flavodoxin | DW150_01620 | Not Available | Negative | 441573 - 442109 | 19884.9 |
| arac family transcriptional regulator | DW150_01625 | Not Available | Positive | 442435 - 443343 | 35396.4 |
| arac family transcriptional regulator | DW150_01630 | Not Available | Positive | 443375 - 444262 | 34155.2 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DW150_01635 | Not Available | Positive | 444449 - 446209 | 64514.6 |
| abc transporter substrate-binding protein | DW150_01640 | Not Available | Negative | 446318 - 447475 | 43513.4 |
| tonb-dependent receptor | DW150_01645 | Not Available | Negative | 447489 - 449666 | 81239.5 |
| hypothetical protein | DW150_01650 | Not Available | Positive | 450106 - 450486 | 13843.3 |
| tonb-dependent receptor | DW150_01655 | Not Available | Positive | 450595 - 452898 | 85921.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

