Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gly | Not Available | Not Available | Positive | 957726 - 957798 | Not Available |
| l-glyceraldehyde 3-phosphate reductase | DW150_03910 | Not Available | Negative | 957869 - 958861 | 36739.9 |
| argininosuccinate lyase | DW150_03915 | Not Available | Negative | 958885 - 960225 | 50693.5 |
| srpbcc family protein | DW150_03920 | Not Available | Negative | 960241 - 960645 | 15287.7 |
| orotate phosphoribosyltransferase | DW150_03925 | Not Available | Negative | 960743 - 961381 | 23412.4 |
| comf family protein | DW150_03930 | Not Available | Negative | 961481 - 962176 | 26140.1 |
| recx family transcriptional regulator | DW150_03935 | Not Available | Negative | 962157 - 962642 | 18844.6 |
| peptide chain release factor n(5)-glutamine methyltransferase | DW150_03940 | Not Available | Negative | 962644 - 963480 | 31731.3 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | DW150_03945 | Not Available | Positive | 963525 - 964592 | 40185.2 |
| hypothetical protein | DW150_03950 | Not Available | Positive | 964705 - 966102 | 52065.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

