Phocaeicola vulgatus strain AM13-21

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM13-21 is a Gram-positive, rod-shaped bacterium that exists predominantly as single cells within host-associated environments. As an anaerobic organism, it thrives in oxygen-depleted niches, which may include the gastrointestinal tracts of various host species. The strain's morphology and anaerobic lifestyle suggest adaptations that enable it to occupy specific ecological niches where oxygen levels are minimal, thereby influencing its interactions with host microbiomes. The presence of P. vulgatus strain AM13-21 in host-associated habitats may indicate its role in complex microbial communities, where it potentially contributes to metabolic processes that benefit the host. Further investigation into the specific interactions and functions of this strain within its ecological context could provide insights into its contributions to host health or homeostasis. Understanding the dynamics of such anaerobic bacteria is crucial, as they may play key roles in nutrient cycling and the maintenance of microbial diversity within host environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AM13-21

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM13-21
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM13-21


Gene Summary

Adenine Count

1539821 bp

Thymine Count

1499100 bp

Guanine Count

1070173 bp

Cytosine Count

1133878 bp

Genome Length

5243870 bp

Protein-coding Genes

4129 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system hipa family toxinDW150_20545Not AvailablePositive4913455 - 491439335884.8
alpha-2-macroglobulinDW150_20550Not AvailablePositive4914506 - 4920184213580.0
duf1573 domain-containing proteinDW150_20560Not AvailablePositive4920807 - 492188339174.1
methylmalonyl co-a mutase-associated gtpase meabDW150_20565Not AvailablePositive4921886 - 492298340361.6
6-phosphofructokinaseDW150_20570Not AvailableNegative4923072 - 492405235428.5
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseDW150_20575Not AvailableNegative4924134 - 492500032583.1
(d)cmp kinaseDW150_20580Not AvailableNegative4924993 - 492568225655.7
oxidoreductaseDW150_20585Not AvailableNegative4925761 - 49258583205.87
arac family transcriptional regulatorDW150_20590Not AvailablePositive4926045 - 492698035502.2
arac family transcriptional regulatorDW150_20595Not AvailableNegative4927020 - 492792234654.4

Displaying genes 3941 – 3950 of 4204 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.