Phocaeicola vulgatus strain AM13-21

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM13-21 is a Gram-positive, rod-shaped bacterium that exists predominantly as single cells within host-associated environments. As an anaerobic organism, it thrives in oxygen-depleted niches, which may include the gastrointestinal tracts of various host species. The strain's morphology and anaerobic lifestyle suggest adaptations that enable it to occupy specific ecological niches where oxygen levels are minimal, thereby influencing its interactions with host microbiomes. The presence of P. vulgatus strain AM13-21 in host-associated habitats may indicate its role in complex microbial communities, where it potentially contributes to metabolic processes that benefit the host. Further investigation into the specific interactions and functions of this strain within its ecological context could provide insights into its contributions to host health or homeostasis. Understanding the dynamics of such anaerobic bacteria is crucial, as they may play key roles in nutrient cycling and the maintenance of microbial diversity within host environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AM13-21

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM13-21
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM13-21


Gene Summary

Adenine Count

1539821 bp

Thymine Count

1499100 bp

Guanine Count

1070173 bp

Cytosine Count

1133878 bp

Genome Length

5243870 bp

Protein-coding Genes

4129 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydrolipoyl dehydrogenaseDW150_19445Not AvailablePositive4652199 - 465353947577.6
d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidaseDW150_19450Not AvailablePositive4653539 - 465493952410.8
5-dehydro-4-deoxy-d-glucuronate isomeraseDW150_19455Not AvailablePositive4655111 - 465595331706.8
gluconate 5-dehydrogenaseDW150_19460Not AvailablePositive4655990 - 465679328590.5
duf4861 domain-containing proteinDW150_19465Not AvailablePositive4656890 - 465806242920.6
polysaccharide deacetylase family proteinDW150_19470Not AvailableNegative4658126 - 465873724627.9
duf2723 domain-containing proteinDW150_19475Not AvailableNegative4658808 - 4662212129153.0
metal abc transporter atp-binding proteinDW150_19480Not AvailableNegative4662673 - 466344028695.6
zinc abc transporter substrate-binding proteinDW150_19485Not AvailableNegative4663450 - 466435534017.5
arac family transcriptional regulatorDW150_19490Not AvailablePositive4665031 - 466552819137.3

Displaying genes 3731 – 3740 of 4204 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.