Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW150_17305 | Not Available | Negative | 4129812 - 4131821 | 75980.2 |
| tonb-dependent receptor | DW150_17310 | Not Available | Negative | 4131842 - 4135297 | 126210.0 |
| sugar phosphate isomerase/epimerase | DW150_17315 | Not Available | Negative | 4135327 - 4136211 | 33276.8 |
| atp-dependent helicase | DW150_17325 | Not Available | Negative | 4140223 - 4141475 | 47584.0 |
| hypothetical protein | DW150_17330 | Not Available | Negative | 4141486 - 4142295 | 30733.6 |
| glycosyltransferase | DW150_17335 | Not Available | Negative | 4142307 - 4143395 | 40632.6 |
| rlob domain-containing protein | DW150_17340 | Not Available | Negative | 4143580 - 4144215 | 24376.1 |
| atp-binding protein | DW150_17345 | Not Available | Negative | 4144219 - 4145439 | 46338.8 |
| acyltransferase | DW150_17350 | Not Available | Negative | 4145648 - 4146646 | 38719.2 |
| radical sam protein | DW150_17355 | Not Available | Negative | 4146651 - 4147724 | 41059.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

