Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ump kinase | DW150_15580 | Not Available | Positive | 3762838 - 3763548 | 25575.2 |
| glycoside hydrolase family 88 protein | DW150_15585 | Not Available | Positive | 3763807 - 3765045 | 47145.1 |
| hypothetical protein | DW150_15590 | Not Available | Positive | 3765100 - 3767208 | 80026.3 |
| duf4450 domain-containing protein | DW150_15595 | Not Available | Positive | 3767349 - 3770606 | 121241.0 |
| histidine phosphatase family protein | DW150_15600 | Not Available | Negative | 3770629 - 3771147 | 19476.5 |
| aaa family atpase | DW150_15605 | Not Available | Negative | 3771550 - 3773130 | 61255.0 |
| ribosome-recycling factor | DW150_15610 | Not Available | Positive | 3773370 - 3773930 | 20738.2 |
| ribosome small subunit-dependent gtpase a | DW150_15615 | Not Available | Positive | 3774051 - 3774983 | 35098.8 |
| m20/m25/m40 family metallo-hydrolase | DW150_15620 | Not Available | Positive | 3774997 - 3776016 | 38293.7 |
| efflux rnd transporter periplasmic adaptor subunit | DW150_15625 | Not Available | Positive | 3776103 - 3777179 | 39714.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

