Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_06340 | Not Available | Negative | 1608915 - 1609523 | 23081.1 |
| tlpa family protein disulfide reductase | DW150_06345 | Not Available | Positive | 1609754 - 1610296 | 20293.0 |
| n-acetylmuramoyl-l-alanine amidase | DW150_06350 | Not Available | Positive | 1610303 - 1611109 | 30829.2 |
| ribonuclease e/g | DW150_06355 | Not Available | Negative | 1611280 - 1612854 | 59719.8 |
| integration host factor subunit beta | DW150_06360 | Not Available | Negative | 1613093 - 1613368 | 10172.4 |
| a/g-specific adenine glycosylase | DW150_06365 | Not Available | Positive | 1613548 - 1614606 | 40461.6 |
| single-stranded dna-binding protein | DW150_06370 | Not Available | Positive | 1614621 - 1615085 | 17117.0 |
| gliding motility-associated protein glde | DW150_06375 | Not Available | Positive | 1615122 - 1616474 | 50844.5 |
| siderophore biosynthesis protein | DW150_06380 | Not Available | Positive | 1616483 - 1617109 | 24351.1 |
| two-component sensor histidine kinase | DW150_06385 | Not Available | Negative | 1617580 - 1619361 | 68701.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

