Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_06015 | Not Available | Positive | 1530136 - 1531050 | 33687.2 |
| s26 family signal peptidase | DW150_06020 | Not Available | Positive | 1531019 - 1531486 | 17951.3 |
| duf1343 domain-containing protein | DW150_06025 | Not Available | Negative | 1531514 - 1532674 | 43556.8 |
| hdig domain-containing protein | DW150_06030 | Not Available | Positive | 1532728 - 1533264 | 20310.5 |
| lps-assembly protein lptd | DW150_06035 | Not Available | Positive | 1533355 - 1536090 | 104037.0 |
| uracil-dna glycosylase | DW150_06040 | Not Available | Negative | 1536167 - 1536829 | 25047.6 |
| aspartate--ammonia ligase | DW150_06045 | Not Available | Negative | 1536947 - 1537987 | 39796.2 |
| Trna-arg | Not Available | Not Available | Positive | 1538190 - 1538264 | Not Available |
| tonb-dependent receptor | DW150_06055 | Not Available | Positive | 1538573 - 1541848 | 121639.0 |
| susd family outer membrane lipoprotein nanu | DW150_06060 | Not Available | Positive | 1541868 - 1543370 | 56956.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

