Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb family protein | DW150_05495 | Not Available | Negative | 1365564 - 1366457 | 31450.6 |
| biopolymer transporter exbd | DW150_05500 | Not Available | Negative | 1366467 - 1366886 | 16051.8 |
| mota/tolq/exbb proton channel family protein | DW150_05505 | Not Available | Negative | 1366893 - 1367606 | 25641.7 |
| pyridoxine 5'-phosphate synthase | DW150_05510 | Not Available | Negative | 1367606 - 1368322 | 26359.6 |
| nad kinase | DW150_05515 | Not Available | Positive | 1368441 - 1369313 | 32143.4 |
| acyloxyacyl hydrolase | DW150_05520 | Not Available | Positive | 1369485 - 1370795 | 49794.6 |
| hypothetical protein | DW150_05525 | Not Available | Negative | 1370826 - 1372661 | 70488.4 |
| xre family transcriptional regulator | DW150_05530 | Not Available | Positive | 1372942 - 1373268 | 12224.8 |
| type ii toxin-antitoxin system hipa family toxin | DW150_05535 | Not Available | Positive | 1373252 - 1374376 | 42455.9 |
| atp-dependent exonuclease | DW150_05545 | Not Available | Negative | 1375276 - 1378356 | 116149.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

