Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| malate dehydrogenase | DW150_05440 | Not Available | Positive | 1353592 - 1354593 | 36100.6 |
| dna primase | DW150_05445 | Not Available | Positive | 1354671 - 1356746 | 78729.5 |
| gtp cyclohydrolase i fole | DW150_05450 | Not Available | Negative | 1356759 - 1357352 | 22693.7 |
| spor domain-containing protein | DW150_05455 | Not Available | Negative | 1357357 - 1357815 | 17067.7 |
| duf1599 domain-containing protein | DW150_05465 | Not Available | Negative | 1359998 - 1360540 | 20822.1 |
| lysm peptidoglycan-binding domain-containing protein | DW150_05470 | Not Available | Negative | 1360654 - 1361544 | 33332.2 |
| nucleoside-diphosphate kinase | DW150_05475 | Not Available | Negative | 1361568 - 1362032 | 17389.1 |
| atp-dependent dna helicase recg | DW150_05480 | Not Available | Negative | 1362255 - 1364351 | 79842.1 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | DW150_05485 | Not Available | Negative | 1364353 - 1365012 | 24344.4 |
| dj-1/pfpi family protein | DW150_05490 | Not Available | Negative | 1365009 - 1365560 | 19282.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

