Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | DW150_05385 | Not Available | Positive | 1343949 - 1344323 | 14142.9 |
| helicase | DW150_05390 | Not Available | Positive | 1344329 - 1345426 | 40866.6 |
| hypothetical protein | DW150_05395 | Not Available | Positive | 1345430 - 1346545 | 42693.9 |
| mobilization protein | DW150_05400 | Not Available | Positive | 1346828 - 1348231 | 54960.8 |
| class a extended-spectrum beta-lactamase cfxa3 | DW150_05405 | Not Available | Negative | 1348324 - 1349289 | 35330.5 |
| is5 family transposase | DW150_05410 | Not Available | Negative | 1349602 - 1350663 | 41529.6 |
| hypothetical protein | DW150_05420 | Not Available | Positive | 1351712 - 1351927 | 8212.13 |
| hypothetical protein | DW150_05425 | Not Available | Positive | 1352182 - 1352430 | 9849.92 |
| hypothetical protein | DW150_05430 | Not Available | Positive | 1352460 - 1353047 | 22156.9 |
| transcriptional regulator | DW150_05435 | Not Available | Positive | 1353058 - 1353348 | 10747.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

