Pantoea agglomerans strain CFBP13505

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Pantoea

Description

Pantoea agglomerans strain CFBP13505 is a Gram-negative, nonsporulating rod-shaped bacterium characterized as a chemoheterotroph that thrives optimally at a temperature of 30.0°C. This strain is notable for its facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its environment. Pantoea agglomerans is known to inhabit multiple ecological niches, suggesting a versatile lifestyle that may contribute to its survival in diverse habitats. The facultative anaerobic nature of strain CFBP13505 indicates its ability to utilize both aerobic respiration and fermentation pathways, thereby enhancing its adaptability to fluctuating oxygen conditions. This adaptability is crucial in environments where oxygen availability can change, highlighting the strain's potential ecological role in nutrient cycling and organic matter decomposition. Further studies on Pantoea agglomerans strain CFBP13505 may reveal insights into its interactions with other microorganisms within its habitats and its contributions to soil and plant health, reflecting the broader ecological significance of this bacterium in maintaining microbial diversity and ecosystem function.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusPantoea
SpeciesPantoea agglomerans
Strainstrain CFBP13505

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pantoea agglomerans strain CFBP13505
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Pantoea agglomerans strain CFBP13505


Gene Summary

Adenine Count

122810 bp

Thymine Count

123506 bp

Guanine Count

139925 bp

Cytosine Count

140910 bp

Genome Length

527151 bp

Protein-coding Genes

514 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
type 1 glutamine amidotransferase domain-containing proteinPagCFBP13505_RS19860Not Available+1 - 68124051.2
lysr family transcriptional regulatorPagCFBP13505_RS19865Not Available-1766 - 267733397.8
srpbcc domain-containing proteinPagCFBP13505_RS19870Not Available+2838 - 335318896.2
phenolic acid decarboxylasePagCFBP13505_RS19875Not Available+4200 - 472420143.4
h(+)/cl(-) exchange transporter clcaPagCFBP13505_RS19880Not Available-4744 - 607246844.0
yics family proteinPagCFBP13505_RS19885Not Available-6227 - 653511552.9
fad-dependent oxidoreductasePagCFBP13505_RS19890Not Available+6701 - 792745171.9
eal domain-containing proteinPagCFBP13505_RS19895Not Available+8080 - 985266564.6
abc transporter substrate-binding proteinPagCFBP13505_RS19900Not Available-9889 - 1082434406.5
abc transporter permeasePagCFBP13505_RS19905Not Available-10848 - 1160927132.4

Displaying genes 1 – 10 of 4621 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

308 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da

Displaying 1–10 of 308 metabolites