Citrobacter freundii strain R47

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain R47 is a Gram-negative, rod-shaped bacterium characterized as a facultative anaerobe. This strain is nonsporulating, indicating its inability to form spores, which may influence its survival strategies in various environments. C. freundii is commonly found in diverse habitats, including hospital sewage, the intestinal tract of mammals, and various aquatic environments such as surface waters and soil. The presence of Citrobacter freundii in hospital sewage highlights its potential role in environments impacted by human activity, where it may participate in nutrient cycling and the degradation of organic matter. Its ability to thrive in both aerobic and anaerobic conditions suggests a versatile metabolic capability, allowing it to adapt to fluctuating oxygen levels in its habitats. This adaptability may also facilitate its growth in the intestinal tract, where oxygen availability can vary significantly. Furthermore, the isolation of C. freundii strain R47 from sewage environments underscores its ecological relevance in the context of wastewater treatment and sanitation. The strain may contribute to biogeochemical processes, including the breakdown of pollutants, which can be critical for maintaining ecosystem health in contaminated environments. Understanding the traits of C. freundii strain R47 enhances our comprehension of microbial dynamics in wastewater contexts and informs potential applications in bioremediation strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain R47

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain R47
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain R47


Gene Summary

Adenine Count

12293 bp

Thymine Count

12398 bp

Guanine Count

14603 bp

Cytosine Count

14670 bp

Genome Length

53964 bp

Protein-coding Genes

69 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinFGF61_RS01815Not AvailablePositive242 - 4668498.13
helix-turn-helix domain-containing proteinFGF61_RS01820Not AvailableNegative484 - 80411651.1
chloramphenicol/florfenicol efflux mfs transporter florFGF61_RS01825Not AvailableNegative832 - 204642713.4
duf3363 domain-containing proteinFGF61_RS26295Not AvailableNegative2263 - 314733025.4
helix-turn-helix domain-containing proteinFGF61_RS01835Not AvailableNegative3178 - 400830371.7
is6-like element is1006 family transposaseFGF61_RS01840Not AvailablePositive4072 - 477627783.5
hypothetical proteinFGF61_RS01845Not AvailableNegative4861 - 533717330.3
tn3-like element tnas3 family transposaseFGF61_RS01850Not AvailableNegative5271 - 8222110604.0
recombinase family proteinFGF61_RS01855Not AvailableNegative8225 - 878521330.6
duf3330 domain-containing proteinFGF61_RS01860Not AvailableNegative8911 - 91237375.51

Displaying genes 1 – 10 of 420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total