Hydrogenophaga crassostreae strain LPB0072

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Hydrogenophaga

Description

Hydrogenophaga crassostreae strain LPB0072 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth at 25.0°C. This strain is part of a genus known for its adaptability to various environmental conditions, often thriving in aquatic habitats. The Gram-negative nature of H. crassostreae indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may confer advantages in nutrient acquisition and resistance to certain environmental stressors. As an aerobic organism, H. crassostreae strain LPB0072 requires oxygen for its metabolic processes, which suggests it may occupy niches with sufficient oxygen availability, such as surface waters or well-oxygenated sediments. The optimal growth temperature of 25.0°C aligns with temperate aquatic environments, indicating that this strain is well-suited to conditions that are not extreme in terms of thermal stress. Understanding the physiological traits of Hydrogenophaga crassostreae strain LPB0072 can provide insights into its potential roles in nutrient cycling within its ecosystem, particularly in the degradation of organic matter or in processes involving hydrogen metabolism. This bacterium may play a significant role in maintaining ecological balance in its habitat by participating in biogeochemical cycles, particularly those involving sulfur and nitrogen compounds, which are often linked to the metabolic activities of aerobic bacteria.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusHydrogenophaga
SpeciesHydrogenophaga crassostreae
Strainstrain LPB0072

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hydrogenophaga crassostreae strain LPB0072


Gene Summary

Adenine Count

959813 bp

Thymine Count

953339 bp

Guanine Count

1515691 bp

Cytosine Count

1515289 bp

Genome Length

4944132 bp

Protein-coding Genes

4558 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
2-dehydro-3-deoxygalactonokinaseLPB072_RS00060Not Available-14039 - 1507036112.2
homocysteine s-methyltransferaseLPB072_RS00065Not Available-15193 - 1617335412.0
trans-sulfuration enzyme family proteinLPB072_RS00070Not Available-16201 - 1743643591.5
abc transporter permeaseLPB072_RS00075Not Available-17527 - 1822225313.3
abc transporter permeaseLPB072_RS00080Not Available-18219 - 1889924677.6
transporter substrate-binding domain-containing proteinLPB072_RS00085Not Available-18929 - 1971128045.2
abc transporter atp-binding proteinLPB072_RS00090Not Available-19771 - 2056829117.3
lrp/asnc family transcriptional regulatorLPB072_RS00095Not Available+20765 - 2122917585.4
2-keto-4-pentenoate hydrataseLPB072_RS00100Not Available-21285 - 2216931052.8
lysr family transcriptional regulatorLPB072_RS00105Not Available+22333 - 2334036674.6

Displaying genes 11 – 20 of 4612 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites