Vibrio scophthalmi strain VS-05

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio scophthalmi strain VS-05 is characterized by having four replicons, which are distinct genetic elements that contribute to its genomic architecture. This strain is cataloged under several accessions, including NZ_CP016415.1, NZ_CP016416.1, NZ_CP016417.1, and NZ_CP016414.1, indicating its availability in genomic databases for further study. The presence of multiple replicons in Vibrio scophthalmi strain VS-05 may suggest a complex genetic organization that could facilitate adaptability and resilience in various environments. This trait is notable in marine bacteria, where diverse genetic elements can enhance survival strategies, particularly in fluctuating ecological conditions. Understanding the genomic structure of Vibrio scophthalmi strain VS-05 can provide insights into its potential ecological roles, especially in marine ecosystems where it may interact with other microbial communities. The genetic diversity inherent in the strain may allow it to thrive in different niches, contributing to nutrient cycling and the overall health of the marine environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio scophthalmi
Strainstrain VS-05

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio scophthalmi strain VS-05
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio scophthalmi strain VS-05


Gene Summary

Adenine Count

879219 bp

Thymine Count

877604 bp

Guanine Count

721997 bp

Cytosine Count

721017 bp

Genome Length

3199837 bp

Protein-coding Genes

2755 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-binding proteinVSVS05_RS14590Not AvailablePositive707 - 3400101173.0
dcmp deaminase family proteinVSVS05_RS14595Not AvailableNegative3381 - 383616973.2
cytosine deaminaseVSVS05_RS14600Not AvailableNegative4505 - 578247734.1
cytosine permeaseVSVS05_RS14605Not AvailableNegative5792 - 703042761.1
azurinVSVS05_RS14610Not AvailablePositive7695 - 814715959.0
dihydroorotaseVSVS05_RS14615Not AvailableNegative8281 - 930937464.7
hybrid-cluster nad(p)-dependent oxidoreductaseVSVS05_RS14620Not AvailablePositive9605 - 1141667321.4
dmt family transporterVSVS05_RS14625Not AvailableNegative11487 - 1239232571.4
helix-turn-helix domain-containing proteinVSVS05_RS14630Not AvailablePositive12491 - 1328230135.9
methyl-accepting chemotaxis proteinVSVS05_RS14635Not AvailableNegative13426 - 1517162680.4

Displaying genes 1 – 10 of 4363 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.