Sphingobium baderi strain DE-13

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium wenxiniae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium baderi strain DE-13


Gene Summary

Adenine Count

43362 bp

Thymine Count

42287 bp

Guanine Count

70496 bp

Cytosine Count

73571 bp

Genome Length

229716 bp

Protein-coding Genes

240 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
tn3 family transposaseATN00_RS22390P51565+207 - 3164110028.0
replication initiator protein aATN00_RS22395Not Available-4188 - 514736630.9
hypothetical proteinATN00_RS22400Not Available-5144 - 553013627.2
para family proteinATN00_RS22405Not Available-5530 - 618323001.3
transcription elongation protein sprtATN00_RS22410Not Available-6290 - 693422720.1
abrb/maze/spovt family dna-binding domain-containing proteinATN00_RS22415Not Available+7387 - 76629605.66
type ii toxin-antitoxin system vapc family toxinATN00_RS22420Not Available+7659 - 805713923.8
histidine phosphatase family proteinATN00_RS22425Not Available+8060 - 866822342.4
hypothetical proteinATN00_RS24140Not Available+9058 - 92858071.32
is6-like element is6100 family transposaseATN00_RS22435P0C1L0-9358 - 1012229684.0

Displaying genes 1 – 10 of 258 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

5 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0002319Cu(+)CuChemical structure of Cu(+)7440-50-8
Average63.546Da
Monoisotopic62.92960108Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0004591fumitremorgin BC27H33N3O5Chemical structure of fumitremorgin BNot available
Average479.577Da
Monoisotopic479.242021175Da
BASm0005134verruculogenC27H33N3O7Chemical structure of verruculogenNot available
Average511.575Da
Monoisotopic511.231850415Da

Displaying 1–5 of 5 metabolites