Bacteroides vulgatus strain mpk

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Bacteroides vulgatus strain mpk is a Gram-positive, rod-shaped bacterium that exists predominantly as single cells and is classified as an anaerobe, indicating its growth occurs in environments devoid of oxygen. This microbe is host-associated, suggesting a symbiotic relationship with the host organism, typically residing in the gastrointestinal tract of humans and other animals. Its anaerobic nature allows it to thrive in the oxygen-poor conditions of the gut, where it plays a pivotal role in the fermentation of complex carbohydrates and the maintenance of gut homeostasis. The presence of Bacteroides vulgatus strain mpk within the host may contribute to various metabolic processes, including the breakdown of dietary fibers and the production of short-chain fatty acids, which are beneficial for host health. Understanding the specific contributions of this strain within the broader context of the gut microbiome can enhance our knowledge of microbial ecology and host-microbe interactions. Given its habitat and traits, Bacteroides vulgatus strain mpk exemplifies the complex relationships that microorganisms form with their hosts, highlighting the importance of anaerobic bacteria in digestive health and metabolic functions within the gastrointestinal ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides vulgatus strain mpk
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides vulgatus strain mpk


Gene Summary

Adenine Count

1514658 bp

Thymine Count

1468421 bp

Guanine Count

1056250 bp

Cytosine Count

1125562 bp

Genome Length

5165891 bp

Protein-coding Genes

4294 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
susd/ragb family nutrient-binding outer membrane lipoproteinBvMPK_RS00055Not Available+18293 - 2026374025.3
hypothetical proteinBvMPK_RS00060Not Available-20575 - 2103917313.7
amp-binding proteinBvMPK_RS00065Not Available-21084 - 2273662298.4
helix-turn-helix domain-containing proteinBvMPK_RS00070Not Available-22820 - 2337420522.8
duf1893 domain-containing proteinBvMPK_RS00075Not Available-23552 - 2397115717.2
4fe-4s binding proteinBvMPK_RS00080Not Available-23989 - 2551555328.3
aldo/keto reductaseBvMPK_RS00085Not Available-25551 - 2693352411.6
hypothetical proteinBvMPK_RS00090Not Available+27170 - 2746611172.8
sodium:solute symporter family proteinBvMPK_RS00095Not Available-27858 - 2974170848.7
alkaline phosphataseBvMPK_RS00100Not Available-29759 - 3066132979.7

Displaying genes 11 – 20 of 4398 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

280 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da

Displaying 1–10 of 280 metabolites