Citrobacter amalonaticus Y19

Gram-negativeFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus Y19 is a Gram-negative bacterium characterized as a facultative anaerobe. This organism can thrive in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels in its habitat. As a member of the Enterobacteriaceae family, C. amalonaticus exhibits metabolic versatility, which is a hallmark of many bacteria within this group. The ability to utilize diverse substrates enhances its survival in complex ecosystems. The Gram-negative nature of C. amalonaticus Y19 indicates a distinctive cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural composition is significant, as it influences not only the bacterium's physiological properties but also its interactions with other microorganisms and its resilience against certain environmental stresses. Facultative anaerobiosis suggests that C. amalonaticus Y19 can switch between fermentation and respiration depending on oxygen availability, a trait that may facilitate its survival in varied ecological niches, such as soil, water, and possibly the gastrointestinal tracts of animals. The metabolic flexibility of C. amalonaticus Y19 may contribute to its role in nutrient cycling within these environments, highlighting its potential importance in microbial dynamics and ecosystem functioning. Further studies could elucidate the specific contributions of this bacterium to its ecological niche and its interactions with other microbial community members.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
StrainY19

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Citrobacter amalonaticus Y19
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus Y19


Gene Summary

Adenine Count

1299557 bp

Thymine Count

1301563 bp

Guanine Count

1490079 bp

Cytosine Count

1493159 bp

Genome Length

5584358 bp

Protein-coding Genes

5062 genes

Non-Coding Genes

258 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinF384_RS26110Not Available-976 - 12459602.27
hypothetical proteinF384_RS26115Not Available-1292 - 181319615.4
hnh endonuclease signature motif containing proteinF384_RS26125Not Available-2944 - 411945125.3
hypothetical proteinF384_RS30195Not Available-4359 - 45235768.25
hypothetical proteinF384_RS26130Not Available-4809 - 525216395.1
hypothetical proteinF384_RS26135Not Available-5313 - 559110373.4
hypothetical proteinF384_RS26140Not Available-5563 - 640530563.2
hypothetical proteinF384_RS26145Not Available-6447 - 676412042.4
antitoxin xre/mbca/pars toxin-binding domain-containing proteinF384_RS26150Q7N4I0+6920 - 736016461.7
res family nad+ phosphorylaseF384_RS26155Q7N4H9+7357 - 781517019.4

Displaying genes 1 – 10 of 5653 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

634 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 634 metabolites