Clavibacter michiganensis subsp. insidiosus strain R1-1

Gram-positiveRodNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter michiganensis subsp. insidiosus strain R1-1 is a Gram-positive, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen in metabolic processes. C. michiganensis subsp. insidiosus is known to inhabit multiple environments, suggesting a versatile ecological adaptability that may contribute to its survival in various ecological niches. The rod shape and specific cellular arrangements may play a role in its interactions within diverse habitats, potentially influencing its colonization strategies and competitive abilities. Given the strain's aerobic nature, it may participate in various biological processes, such as nutrient cycling, which could enhance soil health and plant growth in its native environments. This adaptability underscores the ecological significance of C. michiganensis subsp. insidiosus strain R1-1, highlighting its potential role in maintaining microbial diversity and ecosystem function.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter michiganensis
Strainsubsp. insidiosus strain R1-1

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Clavibacter michiganensis subsp. insidiosus strain R1-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
Pathogenicityeggplant

Genome Summary

Clavibacter michiganensis subsp. insidiosus strain R1-1


Gene Summary

Adenine Count

7938 bp

Thymine Count

7426 bp

Guanine Count

15813 bp

Cytosine Count

16513 bp

Genome Length

47690 bp

Protein-coding Genes

48 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinVO01_RS15355Not Available+31 - 77427808.1
type ii toxin-antitoxin system hica family toxinVO01_RS15360Not Available+1254 - 14637867.59
antitoxin hicbVO01_RS15365Not Available+1463 - 185814556.1
para family proteinVO01_RS15370Not Available+2060 - 273424500.0
hypothetical proteinVO01_RS15375Not Available+2734 - 30099933.7
hypothetical proteinVO01_RS15380Not Available+3089 - 529079876.0
winged helix-turn-helix transcriptional regulatorVO01_RS15385Not Available-5300 - 560211432.7
hypothetical proteinVO01_RS15390Not Available+6120 - 709433708.4
hypothetical proteinVO01_RS15395Not Available+7142 - 752813260.5
hypothetical proteinVO01_RS16800Not Available+7543 - 825323920.8

Displaying genes 1 – 10 of 3331 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites