Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium amiense |
| Strain | strain DSM 16289 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium amiense strain DSM 16289
Gene Summary
Adenine Count
38664 bp
Thymine Count
39322 bp
Guanine Count
68184 bp
Cytosine Count
66226 bp
Genome Length
212396 bp
Protein-coding Genes
214 genes
Non-Coding Genes
14 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| parb/repb/spo0j family partition protein | SAMIE_RS21375 | Not Available | + | 1 - 2163 | 78316.5 |
| strawberry notch-like ntp hydrolase domain-containing protein | SAMIE_RS21380 | Not Available | + | 2242 - 2976 | 27304.2 |
| tyrosine-type recombinase/integrase | SAMIE_RS21385 | Not Available | + | 3145 - 4536 | 51843.0 |
| hypothetical protein | SAMIE_RS21390 | Not Available | + | 4533 - 6320 | 65566.7 |
| integrase | SAMIE_RS21395 | Not Available | + | 6317 - 8542 | 81070.3 |
| ardc family protein | SAMIE_RS21400 | Not Available | + | 8587 - 9489 | 33052.7 |
| zincin-like metallopeptidase domain-containing protein | SAMIE_RS21405 | Not Available | + | 9486 - 9776 | 9665.56 |
| hypothetical protein | SAMIE_RS21410 | Not Available | + | 9787 - 10104 | 11573.9 |
| duf6927 domain-containing protein | SAMIE_RS21415 | Not Available | + | 10131 - 10742 | 22810.5 |
| hypothetical protein | SAMIE_RS21420 | Not Available | + | 10787 - 10987 | 7307.95 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
