Bradyrhizobium japonicum USDA 6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Bradyrhizobium japonicum USDA 6 is a Gram-negative bacterium primarily found in soil environments. This microbe is notable for its symbiotic relationship with leguminous plants, particularly soybeans, where it plays a crucial role in nitrogen fixation. By converting atmospheric nitrogen into a form that can be assimilated by plants, B. japonicum USDA 6 contributes to soil fertility and enhances agricultural productivity. The species is characterized by its slow growth rate and ability to form root nodules on host plants, establishing a mutualistic association that benefits both the bacterium and the host. In these nodules, B. japonicum USDA 6 can thrive in a microaerophilic environment, allowing it to efficiently carry out the process of nitrogen fixation while protecting itself from the host's defense mechanisms. As a soil-dwelling organism, Bradyrhizobium japonicum USDA 6 is adapted to various soil conditions and can influence the composition of microbial communities in its habitat. Its presence can enhance the availability of nitrogen to other soil microorganisms and plants, thereby playing a significant role in nutrient cycling within terrestrial ecosystems. Understanding the traits and ecological functions of B. japonicum USDA 6 can provide insights into sustainable agricultural practices and soil health management, highlighting the importance of soil microbiomes in supporting plant growth and ecosystem stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium japonicum
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium japonicum USDA 6


Gene Summary

Adenine Count

1674281 bp

Thymine Count

1671169 bp

Guanine Count

2930285 bp

Cytosine Count

2931649 bp

Genome Length

9207384 bp

Protein-coding Genes

8677 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+5242500 - 5242513Not Available
Esterase/lipase proteinBJ6T_RS24835Not Available+5248364 - 524922732176.1
phasinBJ6T_RS24840Not Available+5249255 - 524960512691.2
hypothetical proteinBJ6T_RS47410Not Available+5249655 - 52498316737.08
hypothetical proteinBJ6T_RS49190Not Available+5249848 - 52499824855.98
marc family proteinBJ6T_RS24845Not Available+5250007 - 525069624111.8
Phage integraseBJ6T_RS24850Not Available+5251831 - 525300043763.4
Transcriptional regulatorBJ6T_RS24855Not Available+5253217 - 52534147054.51
Hypothetical proteinBJ6T_RS24860Not Available+5253667 - 525432624099.7
hypothetical proteinBJ6T_RS24865Not Available+5254486 - 52546807135.46

Displaying genes 1 – 10 of 8763 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

576 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 576 metabolites