Bradyrhizobium japonicum strain Is-34

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Bradyrhizobium japonicum strain Is-34 is a Gram-negative bacterium primarily found in soybean fields, where it plays a crucial role in symbiotic nitrogen fixation. This strain is a member of the Rhizobiaceae family and is known for its ability to establish a mutualistic relationship with leguminous plants, particularly soybeans (Glycine max). In this symbiosis, B. japonicum infects the root hairs of the soybean plant, leading to the formation of specialized structures known as root nodules. Within these nodules, the bacterium converts atmospheric nitrogen into ammonia, a nutrient that is readily assimilated by the host plant, thereby enhancing its growth and yield. The habitat specificity of strain Is-34 underscores its adaptation to the soybean ecosystem, where it contributes to soil fertility and sustainable agriculture practices. The presence of this strain in agricultural settings may also influence the microbial community structure, thereby impacting soil health and nutrient cycling. Understanding the specific interactions of B. japonicum strain Is-34 within soybean fields can provide insights into optimizing crop production and managing soil resources sustainably. This highlights the importance of maintaining beneficial microbial populations in agricultural systems to support plant health and ecosystem resilience.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium japonicum
Strainstrain Is-34

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoybean fields
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium japonicum strain Is-34


Gene Summary

Adenine Count

1908601 bp

Thymine Count

1907031 bp

Guanine Count

3259496 bp

Cytosine Count

3250853 bp

Genome Length

10326597 bp

Protein-coding Genes

9123 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Upf0114 proteinMA20_29340Not Available-6306382 - 630696021312.6
hypothetical proteinMA20_29345Not Available+6307123 - 630741310355.4
Rlpa-like lipoprotein precursorMA20_29350Not Available+6308416 - 630931531679.2
Dna binding domain proteinMA20_29355Not Available-6309381 - 6313907147592.0
Minor tail proteinMA20_29360Not Available+6314457 - 631499918464.2
Minor tail proteinMA20_29365Not Available+6315079 - 631560618242.6
Minor tail proteinMA20_29370Not Available+6315655 - 631619718845.4
AcetyltransferaseMA20_29375Not Available+6316234 - 631672817717.5
epoxide hydrolaseMA20_29380Not Available-6316725 - 631768135024.9
Penicillin-binding protein 6bMA20_29385Not Available+6317834 - 631909645039.4

Displaying genes 1 – 10 of 9224 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da

Displaying 1–10 of 88 metabolites