Neisseria lactamica 020-06

Gram-negativeCocciNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Neisseriales

Family

Neisseriaceae

Genus

Neisseria

Description

The genus Neisseria, which comprises oxidase positive diplococci that colonise the mucosa of humans and animals, includes species that are never or rarely pathogenic and two human pathogens of global significance, Neisseria meningitidis and Neisseria gonorrhoeae. Neisseria lactamica is closely related to the pathogenic Neisseria and, like them, is only ever isolated from humans. N. lactamica is an obligate commensal inhabitant of the human nasopharynx that establishes long-term normally asymptomatic colonisation. Occurrence of N. lactamica is high in infants and young children and declines as the age of the human host population rises. It has been suggested that colonisation of children with N. lactamica plays a role in the development of immunity to the meningococcus, and anti-meningococcal vaccines based N. lactamica have been proposed at various times. Strain 020-06 belongs to sequence type ST-640 and was isolated from a six-week-old child from the UK in 1997. A plasmid of 3,151 bp was present in the organism but does not seem to have been submitted to the INSDC database (adapted from PMID 21092259). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNeisseriales
FamilyNeisseriaceae
GenusNeisseria
SpeciesNeisseria lactamica
StrainST-640

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Neisseria lactamica 020-06
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature35
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementPairs
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNo

Genome Summary

Neisseria lactamica 020-06


Gene Summary

Adenine Count

533832 bp

Thymine Count

525952 bp

Guanine Count

580974 bp

Cytosine Count

579848 bp

Genome Length

2220606 bp

Protein-coding Genes

2098 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+274782 - 274808Not Available
Virion morphogenesis proteinNLA_RS01500Not Available-275198 - 27564116074.3
Virion morphogenesis proteinNLA_RS01505Q01259-275644 - 27654633919.6
Putative portal proteinNLA_RS01510Not Available-276543 - 27801255036.2
hypothetical proteinNLA_RS01515Not Available-278028 - 27830310533.4
Portal proteinNLA_RS01520P44224-278305 - 27980155559.2
Gp27NLA_RS01525Not Available-279812 - 28034219501.3
Hypothetical proteinNLA_RS01530Not Available-280344 - 28066112105.6
Gp54NLA_RS01535Not Available-280658 - 28097812606.5
Dksa-like zinc finger domain containing proteinNLA_RS01540Not Available-280982 - 2811947803.05

Displaying genes 1 – 10 of 2214 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1747 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da

Displaying 1–10 of 1747 metabolites