Paenibacillus polymyxa SC2

Gram-positiveRodMotileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus polymyxa (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) is an important plant growth-promoting rhizobacterium (PGPR), Gramm-positive bacterium isolated from the rhizosphere of pepper in Guizhou, China. It is widespread in the soil and widely used in agriculture, industry, and environmental remediation because of its multiple functions. It has been widely used in biological control of soil-borne plant diseases. There are many essential genes in the plasmid, such as the genes involving the metabolism of purine, pyrimidine, and lipid, as well as ribosomal proteins, translation elongation factors, and different types of DNA methyltransferase, indicating its importance to the strains life. There are many genes involved in antibiotic biosynthesis in the chromosome, such as a fusaricidin-synthetic gene (PPSC2_c0086), a polymyxin-synthetic gene cluster (PPSC2_c4710-c4715), a bacitracin synthetase 1 gene (PPSC2_c2653), an iturin A synthetase gene (PPSC2_c2652), a lantibiotic-synthetic gene cluster (PPSC2_c1561-c1567), a bacillorin synthetase B gene (PPSC2_c2638), and a polyketide-synthetic gene cluster (PPSC2_c3386-c3400). (Adapted from PMID: 21037012). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus polymyxa
StrainSC2

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Paenibacillus polymyxa SC2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationSporulating
Energy sourceChemoheterotroph
PathogenicityNo

Genome Summary

Paenibacillus polymyxa SC2


Gene Summary

Adenine Count

160302 bp

Thymine Count

157958 bp

Guanine Count

95876 bp

Cytosine Count

95982 bp

Genome Length

510118 bp

Protein-coding Genes

598 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Trna-trpNot AvailableNot Available+5288 - 5361Not Available
Trna-tyrNot AvailableNot Available+5366 - 5441Not Available
Trna-glnNot AvailableNot Available+5449 - 5522Not Available
Trna-hisNot AvailableNot Available+5529 - 5605Not Available
Trna-aspNot AvailableNot Available+5611 - 5686Not Available
Trna-glyNot AvailableNot Available+5812 - 5887Not Available
Trna-asnNot AvailableNot Available+5898 - 5973Not Available
Trna-tyrNot AvailableNot Available+5986 - 6066Not Available
Trna-ileNot AvailableNot Available+6076 - 6153Not Available
Trna-glnNot AvailableNot Available+6158 - 6231Not Available

Displaying genes 11 – 20 of 5861 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites