Paenibacillus polymyxa E681

Gram-positiveRodMotileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus polymyxa (strain E681) is a spore-forming Gram-positive bacterium isolated from the rhizosphere of winter barley grown in Korea. It has a great potential for agricultural applications due to its ability to promote plant growth and suppress plant diseases. P. polymyxa produces antibiotics (polymyxin, fusaricidin) and a plant hormone, secretes a variety of hydrolytic enzymes, and has a good root-colonizing ability. It may also synthesize a polyketide, a tridecaptin-like non-ribosomal peptide, and a hybrid of polyketide and non-ribosomal peptide. P. polymyxa also produces volatiles that may promote growth and induce resistance of plants, and one or more N-acyl-L-homoserine lactonases. (Adapted from PMID: 20851896). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus polymyxa
StrainE681

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Paenibacillus polymyxa E681
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationSporulating
Energy sourceChemoheterotroph
PathogenicityNo

Genome Summary

Paenibacillus polymyxa E681


Gene Summary

Adenine Count

1461365 bp

Thymine Count

1463194 bp

Guanine Count

1228869 bp

Cytosine Count

1241455 bp

Genome Length

5394883 bp

Protein-coding Genes

4751 genes

Non-Coding Genes

147 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Gp167PPE_RS05235Not Available-1178243 - 117891425470.6
5'-nucleotidase c-terminal domain-containing proteinPPE_RS05240A9BJC1-1179158 - 118104967081.1
Hypothetical proteinPPE_RS05245Not Available-1181244 - 118166916674.2
Immunity repressor protein (phage-like protein)PPE_RS05250O32236-1181681 - 118215418147.3
Arpu-like transcriptional regulatorPPE_RS05255Not Available+1182458 - 118293418145.6
Hypothetical proteinPPE_RS05260Not Available+1183405 - 118426531602.8
hypothetical proteinPPE_RS05265Not Available+1184276 - 11844948114.57
Tail sheath subtilisin-like domain-containing proteinPPE_RS05270Not Available+1184497 - 118596351748.3
XkdmPPE_RS05275Not Available+1186086 - 118649315320.2
XkdnPPE_RS05280Not Available+1186570 - 118700415886.2

Displaying genes 1 – 10 of 4898 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

239 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da

Displaying 1–10 of 239 metabolites