Brachyspira pilosicoli 95/1000

Gram-negativeSpirillaNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Brachyspirales

Family

Brachyspiraceae

Genus

Brachyspira

Description

Brachyspira pilosicoli (strain ATCC BAA-1826 / 95/1000) is an anaerobic Gram-negative bacterium which colonizes the large intestine of various species of birds and mammals, including humans. It causes "intestinal spirochetosis", a condition characterized by mild colitis, diarrhea and reduced growth. The three Brachyspira species shared 1,087 genes and showed evidence of extensive genome rearrangements. Despite minor differences in predicted protein functional groups, the species had many similar features including core metabolic pathways. Genes distinguishing B. pilosicoli from B. hyodysenteriae included those for a previously undescribed bacteriophage that may be useful for genetic manipulation, for a glycine reductase complex allowing use of glycine whilst protecting from oxidative stress, and for aconitase and related enzymes in the incomplete TCA cycle, allowing glutamate synthesis and function of the cycle during oxidative stress. B. pilosicoli had substantially fewer methyl-accepting chemotaxis genes than B. hyodysenteriae and hence these species are likely to have different chemotactic responses that may help to explain their different host range and colonization sites. B. pilosicoli lacked the gene for a new putative hemolysin identified in B. hyodysenteriae WA1. (adapted from PMID: 20625514). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderBrachyspirales
FamilyBrachyspiraceae
GenusBrachyspira
SpeciesBrachyspira pilosicoli
Strain95/1000

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Sus scrofa
Cell arrangementNot Available
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityYes

Genome Summary

Brachyspira pilosicoli 95/1000


Gene Summary

Adenine Count

925553 bp

Thymine Count

939350 bp

Guanine Count

358923 bp

Cytosine Count

362617 bp

Genome Length

2586443 bp

Protein-coding Genes

2268 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative head portal proteinBP951000_RS07315Not Available-1611091 - 161238949493.7
Putative dna methylaseBP951000_RS07320Not Available-1612460 - 161337135289.2
Gp1, phage terminase, small subunit, p27 familyBP951000_RS07325Not Available+1613469 - 161389715733.1
Terminase large subunitBP951000_RS07330Not Available+1613903 - 161567568340.1
atp-grasp fold amidoligase family proteinBP951000_RS00010Not Available+1214 - 249751858.6
glycosyltransferase family 9 proteinBP951000_RS00015Not Available+2611 - 384648984.1
class i sam-dependent methyltransferaseBP951000_RS00020Not Available+4040 - 510741560.5
lipoproteinBP951000_RS00025Not Available+5349 - 574715036.8
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseBP951000_RS00030Not Available+5873 - 727052942.4
methyl-accepting chemotaxis proteinBP951000_RS00035Not Available+7347 - 960284895.6

Displaying genes 11 – 20 of 2315 in total

Metabolites

542 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 542 metabolites