Nitrosococcus halophilus Nc 4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Chromatiaceae

Genus

Nitrosococcus

Description

Nitrosococcus halophilus Nc 4 is a Gram-negative, halophilic bacterium known for its role in the nitrogen cycle, particularly in marine and hypersaline environments. This microbe is capable of oxidizing ammonium to nitrite, a critical process in nitrification, which contributes to nitrogen availability in saline ecosystems. As a member of the Nitrosococcus genus, it exhibits specific adaptations that allow it to thrive in high-salinity conditions, differentiating it from non-halophilic nitrifying bacteria. The halophilic nature of Nitrosococcus halophilus Nc 4 suggests that it possesses unique osmoregulatory mechanisms and cellular structures that facilitate survival in extreme salt concentrations. Its Gram-negative cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane, may also contribute to its resilience in such environments, providing a barrier against osmotic stress and potentially harmful compounds. Understanding the biochemical pathways and environmental requirements of Nitrosococcus halophilus Nc 4 can offer insights into the functioning of microbial communities in hypersaline habitats. This species not only plays a significant role in nitrogen cycling but may also influence the broader ecological dynamics within these unique ecosystems, including nutrient availability and interactions with other halophilic microorganisms. Such insights could enhance our understanding of biogeochemical processes in extreme environments and inform the conservation of microbial biodiversity in saline ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilyChromatiaceae
GenusNitrosococcus
SpeciesNitrosococcus halophilus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nitrosococcus halophilus Nc 4


Gene Summary

Adenine Count

15721 bp

Thymine Count

15246 bp

Guanine Count

16996 bp

Cytosine Count

17870 bp

Genome Length

65833 bp

Protein-coding Genes

66 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dead/deah box helicase family proteinNHAL_RS19225Not Available-154 - 3549129471.0
restriction endonuclease subunit sNHAL_RS19995Not Available-3565 - 481545960.9
class i sam-dependent dna methyltransferaseNHAL_RS19235Not Available-4812 - 627255298.4
type ii toxin-antitoxin system rele/pare family toxinNHAL_RS19240Not Available+6630 - 695612145.4
dna-binding proteinNHAL_RS19245Not Available+6960 - 727711819.4
metal-dependent hydrolaseNHAL_RS19250Not Available-7450 - 855641195.6
duf4926 domain-containing proteinNHAL_RS19255Not Available-8612 - 88367861.48
duf6883 domain-containing proteinNHAL_RS19260Not Available-8836 - 918012934.7
atp-binding proteinNHAL_RS19265Not Available-9182 - 1017436224.5
hypothetical proteinNHAL_RS19275Not Available-10816 - 110528956.76

Displaying genes 1 – 10 of 3968 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1696 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da

Displaying 1–10 of 1696 metabolites