Solidesulfovibrio magneticus RS-1

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Solidesulfovibrio

Description

Solidesulfovibrio magneticus RS-1 is a Gram-negative, magnetotactic bacterium characterized by its ability to orient and migrate along magnetic fields. This unique trait is attributed to the presence of magnetosomes, which are intracellular organelles containing magnetic iron minerals. The bacterium exhibits a distinctive rod-shaped morphology, contributing to its motility in aquatic environments. As a member of the sulfate-reducing bacteria, Solidesulfovibrio magneticus RS-1 plays a significant role in biogeochemical cycles, particularly in sulfur and iron transformations. This microbe utilizes sulfate as a terminal electron acceptor during anaerobic respiration, thereby contributing to the reduction of sulfate to sulfide. The ecological implications of this metabolic pathway are noteworthy, as it influences nutrient cycling and can impact the overall health of sedimentary ecosystems. Furthermore, the magnetotactic behavior of Solidesulfovibrio magneticus RS-1 suggests its potential role in sediment stratification and geomicrobiology. By aligning with geomagnetic fields, this bacterium may enhance its access to nutrients and optimize its habitat within sediment layers. Overall, the unique combination of magnetotaxis and sulfate-reducing capabilities positions Solidesulfovibrio magneticus RS-1 as an important player in both microbial ecology and environmental biogeochemistry.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusSolidesulfovibrio
SpeciesSolidesulfovibrio magneticus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Solidesulfovibrio magneticus RS-1


Gene Summary

Adenine Count

976678 bp

Thymine Count

977201 bp

Guanine Count

1646869 bp

Cytosine Count

1647301 bp

Genome Length

5248049 bp

Protein-coding Genes

4569 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dnaa atpase domain-containing proteinDMR_RS00005Not Available+126 - 146649936.9
dna polymerase iii subunit betaDMR_RS00010Not Available+1834 - 302743651.8
dna topoisomerase (atp-hydrolyzing) subunit bDMR_RS00015Not Available+3024 - 543890346.4
dna gyrase subunit aDMR_RS00020Not Available+5459 - 790090369.1
tetratricopeptide repeat proteinDMR_RS00025Not Available+7879 - 868529389.1
pilz domain-containing proteinDMR_RS00030Not Available+8788 - 966333088.0
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabcDMR_RS00035Not Available+9691 - 1091142780.2
hypothetical proteinDMR_RS00040Not Available+10887 - 1171429338.1
nfed family proteinDMR_RS00045Not Available+11686 - 1301446172.0
slipin family proteinDMR_RS00050Not Available+13138 - 1399831569.3

Displaying genes 1 – 10 of 4714 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1611 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 1611 metabolites