Burkholderia vietnamiensis G4

Gram-negativeRodMotileFacultative aerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

The Burkholderia cepacia complex (Bcc) comprises at least nine closely related species which can be correctly identified only by polyphasic taxonomic approaches. Members of the complex are among the most metabolically versatile microorganisms known as they grow on more than 200 organic compounds, fix N2 and carry multiple antibiotic resistances. They are involved in important processes such as biodegradation of pollutants, biocontrol of root diseases but some also cause disease in plants, animals and humans. Bcc strains are isolated from very different habitats, including soil, rhizospheres, streams and infected plants, animals and human tissues, especially lungs of cystic fibrosis (CF) patients. Bcc strains have large and plastic genomes comprised of multiple (2 to 4) replicons, which is thought to give them their ecological versatility. B. vietnamiensis is known for its rhizosphere colonizing ability on rice, and its ability to fix N2 (PubMed 11375196). It is also the third most frequent Bcc species isolated from CF patients. B. vietnamiensis strain G4 (formerly B.cepacia strain R1808) is the best trichloroethene (TCE) co-oxidizing strain yet discovered, having been isolated from an industrial waste treatment facility at Pensacola Naval Air Station, Florida, U.S.A. TCE and its sister chloroethenes are the most widespread hazardous environmental contaminants in groundwaters. It has been used at a number of polluted sites to aid clean-up of ground water. Besides its pollutant degrading ability, this strain was sequenced because well-characterized members of this species come from the CF lung, rice rhizosphere and soil, and hence offer the prospect for differentiating traits important to each habitat (adapted from http://genome.jgi-psf.org/bur08/bur08.home.html). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia vietnamiensis
StrainG4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Gene Summary

Adenine Count

208593 bp

Thymine Count

207842 bp

Guanine Count

414614 bp

Cytosine Count

409958 bp

Genome Length

1241007 bp

Protein-coding Genes

1087 genes

Non-Coding Genes

5 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dihydroxyacetone kinase family proteinBCEP1808_RS27150Not Available+199 - 190858188.7
mfs transporterBCEP1808_RS27155Not Available+2325 - 371048946.7
methyl-accepting chemotaxis proteinBCEP1808_RS27160Not Available-4039 - 573959436.7
aspartate aminotransferase family proteinBCEP1808_RS27165Not Available-5980 - 737449959.0
nad-dependent succinate-semialdehyde dehydrogenaseBCEP1808_RS27170Not Available-7406 - 888452152.7
lrp/asnc family transcriptional regulatorBCEP1808_RS27175Not Available-9008 - 947817671.2
n(2)-acetyl-l-2,4-diaminobutanoate deacetylase doebBCEP1808_RS27180Not Available-9492 - 1052936712.9
ectoine hydrolase doeaBCEP1808_RS27185Not Available-10534 - 1174244627.2
cyclodeaminaseBCEP1808_RS27190Not Available-11753 - 1275735179.2
hydroxyectoine utilization dehydratase eutbBCEP1808_RS27195Not Available-12759 - 1373033526.5

Displaying genes 1 – 10 of 5433 in total

Metabolites

1759 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 1759 metabolites