Verminephrobacter eiseniae EF01-2

Gram-negativerod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Verminephrobacter

Description

This species was isolated from the common composting earthworm Eisenia foetida. Earthworm egg capsules contain high numbers of the bacterial endosymbiont, acquired by transfer from nephridia into the egg capsules. Juvenile earthworms are colonized during embryonic development within the egg capsule, and failing this are not likely to acquire the symbiont by association with colonized adults or their bedding. A function for these bacteria has not yet been ascribed. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Betaproteobacteria
Order	Burkholderiales
Family	Comamonadaceae
Genus	Verminephrobacter
Species	Verminephrobacter eiseniae
Strain	EF01-2

Profile

Physiology
Gram staining properties	Negative
Shape	rod
Mobility	Not Available
Flagellar presence	Not Available
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Not Available
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	HostAssociated
Biotic relationship	Symbiotic
Host(s)	Eisenia foetida
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	organotroph; chemotroph
Pathogenicity	No

Genome Summary

Verminephrobacter eiseniae EF01-2

NC_008786.1 NC_008771.1

Gene Summary

Adenine Count

968620 bp

Thymine Count

964206 bp

Guanine Count

1814980 bp

Cytosine Count

1818943 bp

Genome Length

5566749 bp

Protein-coding Genes

5230 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

2

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
tim barrel protein	VEIS_RS00295	Q7T3H9	-	70470 - 71276	29217.1
atp-binding cassette domain-containing protein	VEIS_RS00300	Not Available	-	71328 - 72128	28581.9
abc transporter permease	VEIS_RS00305	P37772	-	72130 - 73233	39066.9
sugar abc transporter substrate-binding protein	VEIS_RS00310	Not Available	-	73304 - 74239	31859.4
sugar abc transporter atp-binding protein	VEIS_RS00315	A0K6Q0	-	74299 - 75849	56428.2
tripartite tricarboxylate transporter substrate binding protein	VEIS_RS00320	Not Available	-	75875 - 76858	34359.8
sugar abc transporter substrate-binding protein	VEIS_RS00325	Not Available	-	76944 - 77873	32633.6
sugar abc transporter substrate-binding protein	VEIS_RS00330	Not Available	-	78013 - 78945	32815.7
5-dehydro-2-deoxygluconokinase	VEIS_RS00335	Q63B75	+	79212 - 81209	72637.1
3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	VEIS_RS00340	Q5KYR0	+	81212 - 83095	67096.3

Displaying genes 61 – 70 of 5334 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P		Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000250	2,5-didehydro-D-gluconateC6H7O7		`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000251	2-dehydropantoateC6H9O4		Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000253	2-oxopent-4-enoateC5H5O3		Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000254	3-hydroxy-2-methylpropanoateC4H7O3		Not available	Average103.098Da Monoisotopic103.0400677Da
BASm0000258	3-(carbamoylamino)propanoateC4H7N2O3		Not available	Average131.112Da Monoisotopic131.046215673Da
BASm0000259	3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000265	4-formylbenzenesulfonateC7H5O4S		Not available	Average185.17Da Monoisotopic184.991403395Da
BASm0000272	(E)-4-coumarateC9H7O3		Not available	Average163.1501Da Monoisotopic163.0395191Da

Displaying 1–10 of 2071 metabolites