Verminephrobacter eiseniae EF01-2

Gram-negativerod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Verminephrobacter

Description

This species was isolated from the common composting earthworm Eisenia foetida. Earthworm egg capsules contain high numbers of the bacterial endosymbiont, acquired by transfer from nephridia into the egg capsules. Juvenile earthworms are colonized during embryonic development within the egg capsule, and failing this are not likely to acquire the symbiont by association with colonized adults or their bedding. A function for these bacteria has not yet been ascribed. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Betaproteobacteria
Order	Burkholderiales
Family	Comamonadaceae
Genus	Verminephrobacter
Species	Verminephrobacter eiseniae
Strain	EF01-2

Profile

Physiology
Gram staining properties	Negative
Shape	rod
Mobility	Not Available
Flagellar presence	Not Available
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Not Available
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	HostAssociated
Biotic relationship	Symbiotic
Host(s)	Eisenia foetida
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	organotroph; chemotroph
Pathogenicity	No

Genome Summary

Verminephrobacter eiseniae EF01-2

NC_008786.1 NC_008771.1

Gene Summary

Adenine Count

6439 bp

Thymine Count

6473 bp

Guanine Count

9125 bp

Cytosine Count

9157 bp

Genome Length

31194 bp

Protein-coding Genes

45 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
chromosomal replication initiator protein dnaa	VEIS_RS00005	A2SBM4	+	493 - 1944	54010.7
dna polymerase iii subunit beta	VEIS_RS00010	Q9I7C4	+	2040 - 3158	40870.6
dna topoisomerase (atp-hydrolyzing) subunit b	VEIS_RS00015	P0A2I4	+	3321 - 5927	94914.4
mobile mystery protein b	VEIS_RS00025	Not Available	-	7315 - 7905	22259.3
mobile mystery protein a	VEIS_RS00030	Not Available	-	7896 - 8357	17560.1
tote conflict system archaeo-eukaryotic primase domain-containing protein	VEIS_RS00035	Q5UQ46	+	8634 - 11030	88874.0
lysr family transcriptional regulator	VEIS_RS00040	Q8VWE6	+	11421 - 12317	32044.2
xanthine dehydrogenase accessory protein xdhc	VEIS_RS00045	Not Available	-	12346 - 13149	27770.0
mfs transporter	VEIS_RS00050	Not Available	+	13414 - 14997	55989.1
uroporphyrinogen decarboxylase	VEIS_RS00055	A1WDU6	+	15099 - 16211	39740.7

Displaying genes 1 – 10 of 5334 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000250	2,5-didehydro-D-gluconateC6H7O7		`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000253	2-oxopent-4-enoateC5H5O3		Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000274	aldehydo-D-galacturonateC6H9O7		Not available	Average193.132Da Monoisotopic193.0353762Da
BASm0000428	3-oxoadipateC6H6O5		Not available	Average158.11Da Monoisotopic158.022620453Da
BASm0000553	biphenyl-2,3-diolC12H10O2		Not available	Average186.2066Da Monoisotopic186.0680796Da
BASm0000592	(S)-1-phenylethanolC8H10O		Not available	Average122.1644Da Monoisotopic122.0731649Da
BASm0000893	crotonobetaineC7H13NO2		`927-89-9`	Average143.1836Da Monoisotopic143.0946287Da
BASm0000989	GlycerolC3H8O3		`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001003	phthalateC8H4O4		Not available	Average164.117Da Monoisotopic164.0120558Da

Displaying 1–10 of 1715 metabolites