Verminephrobacter eiseniae EF01-2

Gram-negativerod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Verminephrobacter

Description

This species was isolated from the common composting earthworm Eisenia foetida. Earthworm egg capsules contain high numbers of the bacterial endosymbiont, acquired by transfer from nephridia into the egg capsules. Juvenile earthworms are colonized during embryonic development within the egg capsule, and failing this are not likely to acquire the symbiont by association with colonized adults or their bedding. A function for these bacteria has not yet been ascribed. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVerminephrobacter
SpeciesVerminephrobacter eiseniae
StrainEF01-2

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Eisenia foetida
Cell arrangementNot Available
SporulationNot Available
Energy sourceorganotroph; chemotroph
PathogenicityNo

Genome Summary

Verminephrobacter eiseniae EF01-2

NC_008786.1NC_008771.1

Gene Summary

Adenine Count

968620 bp

Thymine Count

964206 bp

Guanine Count

1814980 bp

Cytosine Count

1818943 bp

Genome Length

5566749 bp

Protein-coding Genes

5230 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chase3 domain-containing proteinVEIS_RS00160P54663-42665 - 4404150690.2
response regulator transcription factorVEIS_RS00165P0AED5+44140 - 4477223282.3
hypothetical proteinVEIS_RS27950Not Available-44742 - 449517191.61
response regulatorVEIS_RS00170Not Available-45035 - 4544214557.4
hesa/moeb/thif family proteinVEIS_RS00175P30138-45576 - 4632526261.9
hypothetical proteinVEIS_RS25085Not Available-46322 - 4663011211.0
s41 family peptidaseVEIS_RS00180Q44879-46637 - 4807352312.6
2,3-diphosphoglycerate-dependent phosphoglycerate mutaseVEIS_RS00185A1WDX2-48218 - 4895527032.4
ilvd/edd family dehydrataseVEIS_RS00190Q92RP0-49114 - 5100366160.9
tripartite tricarboxylate transporter substrate binding proteinVEIS_RS00195Not Available+51244 - 5220333099.2

Displaying genes 31 – 40 of 5334 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2071 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 2071 metabolites