Acidovorax sp. JS42

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Acidovorax

Description

Acidovorax sp. is an aerobic mesophillic Gram-negative bacterium phylogenetically associated with the beta subdivision of the Proteobacteria. It is formerly known as Pseudomonas sp. JS42. This nitroaromatic compound-degrader organism was isolated from nitrobenzene-contaminated sediment and is capable of using 2-nitrotolulene as a sole carbon and energy source. 2-nitrotolulene, a nitroaromatic compound, is used in the manufacture of dyes, pigments and explosives. Nitroaromatic compounds, which contain an aromatic ring with one or more nitro groups attached, are a significant contaminant in industrial soils. Acidovorax sp. JS42 degrades 2-nitrotolulene by first removing the nitro moiety producing 3-methylcatechol. The enzyme involved in this process, 2-nitrotolulene dioxygenase, has been purified and characterized. The genome sequence of this organism will provide information about the gene content of a free-living species with a catabolic capacity relevant to bioremediation of nitroaromatic-contaminated soils. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusAcidovorax
SpeciesAcidovorax sp. JS42
StrainJS42

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Acidovorax sp. JS42
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Acidovorax sp. JS42

NC_008766.1NC_008782.1NC_008765.1

Gene Summary

Adenine Count

12945 bp

Thymine Count

14527 bp

Guanine Count

22697 bp

Cytosine Count

22520 bp

Genome Length

72689 bp

Protein-coding Genes

89 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zincin-like metallopeptidase domain-containing proteinAJS_RS21145Not AvailablePositive4 - 4746173347.0
recombinase family proteinAJS_RS21150Not AvailableNegative5044 - 561920286.3
type ii toxin-antitoxin system yafq family toxinAJS_RS21155Not AvailableNegative5746 - 59949271.98
hypothetical proteinAJS_RS22225Not AvailablePositive6137 - 63558130.85
dna cytosine methyltransferaseAJS_RS21160Not AvailablePositive6352 - 730834803.8
ngomiv family type ii restriction endonucleaseAJS_RS21165Not AvailablePositive7308 - 817130783.6
hypothetical proteinAJS_RS22665Not AvailablePositive8168 - 83415885.08
hypothetical proteinAJS_RS21170Not AvailablePositive8338 - 85447496.54
hypothetical proteinAJS_RS21175Not AvailableNegative8608 - 88418294.83
helix-turn-helix domain-containing proteinAJS_RS22230Not AvailablePositive8877 - 90747116.53

Displaying genes 1 – 10 of 4386 in total

Metabolites

1830 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da

Displaying 1–10 of 1830 metabolites

Health Effects

No health effects information available for this bacterium.