Magnetococcus marinus MC-1

spheremicroaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Magnetococcia

Order

Magnetococcales

Family

Magnetococcaceae

Genus

Magnetococcus

Description

Magnetococcus marinus MC-1 is a Gram-negative, spherical bacterium that exhibits microaerophilic growth, thriving optimally at a temperature of 25.0°C. This organism is notable for its ability to orient itself along magnetic fields, a characteristic that is facilitated by the presence of magnetosomes, specialized organelles that contain magnetic iron minerals. These traits suggest a specialized adaptation to aquatic environments where the orientation provided by magnetic fields may enhance its ecological niche, potentially aiding in navigation towards optimal light conditions for photosynthesis or nutrient availability. The Gram-negative nature of Magnetococcus marinus MC-1 indicates a complex cell envelope structure, which typically includes an outer membrane composed of lipopolysaccharides, contributing to its environmental resilience. Its spherical shape may confer advantages in nutrient uptake and motility in viscous aquatic environments. The microaerophilic oxygen requirement suggests that this bacterium thrives in conditions where oxygen levels are lower than atmospheric concentration, possibly indicative of its habitat in stratified water columns or sediments where oxygen gradients are prevalent. Understanding the physiological traits of Magnetococcus marinus MC-1 not only sheds light on its survival strategies but also highlights the potential roles such microorganisms play in biogeochemical cycles within their habitats. This unique adaptation to specific environmental conditions may contribute to the overall microbial diversity and functioning of marine ecosystems, particularly in relation to magnetotaxis and nutrient cycling processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassMagnetococcia
OrderMagnetococcales
FamilyMagnetococcaceae
GenusMagnetococcus
SpeciesMagnetococcus marinus
StrainMC-1

Profile

Physiology
Gram staining propertiesGram-negative
Shapesphere
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Magnetococcus marinus MC-1


Gene Summary

Adenine Count

1086849 bp

Thymine Count

1076254 bp

Guanine Count

1262935 bp

Cytosine Count

1293543 bp

Genome Length

4719581 bp

Protein-coding Genes

3584 genes

Non-Coding Genes

286 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hypothetical proteinMMC1_RS06270Not Available+1531499 - 153246436618.4
duf3102 domain-containing proteinMMC1_RS06275Not Available+1532464 - 153329731462.7
hypothetical proteinMMC1_RS06280Not Available+1533300 - 153379418453.0
AtpaseMMC1_RS06285Not Available+1533791 - 153469333260.6
hypothetical proteinMMC1_RS06290Not Available+1534699 - 153534023402.1
Pas53MMC1_RS06295Not Available+1535352 - 153703461213.5
duf6511 domain-containing proteinMMC1_RS06300Not Available+1537034 - 153745916220.8
Toxin-antitoxin-like proteinMMC1_RS06305Not Available+1537470 - 153818327312.6
ExonucleaseMMC1_RS06310Not Available+1538180 - 153895628628.1
Putative dna primase-helicaseMMC1_RS06315Not Available+1538953 - 154109177778.8

Displaying genes 1 – 10 of 3870 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1645 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1645 metabolites