Leifsonia xyli subsp. xyli str. CTCB07

Gram-negativeBacilliNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Leifsonia

Description

Leifsonia xyli subsp. xyli is a Gram-positive bacterium that causes ratoon stunting disease and affects sugarcane worldwide.(From http://www.expasy.org/sprot/hamap/LEIXX.html) (BacMap)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusLeifsonia
SpeciesLeifsonia xyli
StrainCTCB07

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceNot Available
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature20
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Leifsonia xyli subsp. xyli str. CTCB07


Gene Summary

Adenine Count

418687 bp

Thymine Count

416615 bp

Guanine Count

874000 bp

Cytosine Count

874856 bp

Genome Length

2584158 bp

Protein-coding Genes

2611 genes

Non-Coding Genes

109 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hypothetical proteinLXX_RS14045Not Available-374465 - 37493216262.2
Putative transposase aLXX_RS15180Not Available+375552 - 37585711265.3
hypothetical proteinLXX_RS13270Not Available+375854 - 3760878647.29
is110-like element islxx2 family transposaseLXX_RS01760Not Available+376712 - 37782140755.4
AttlNot AvailableNot Available+377678 - 377691Not Available
TransposaseLXX_RS01765Not Available+377832 - 37814011546.0
Helix-turn-helix motifLXX_RS16495Not Available-378114 - 37842211208.2
hypothetical proteinLXX_RS15185Not Available-378340 - 3785106392.46
hypothetical proteinLXX_RS01775Not Available-378865 - 37931716815.0
hypothetical proteinLXX_RS01780Not Available-379314 - 37961311046.2

Displaying genes 1 – 10 of 2720 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1667 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1667 metabolites