Bacillus amyloliquefaciens strain 12B

Gram-positiveRodMotileAerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Bacillaceae

Genus

Bacillus

Description

Bacillus amyloliquefaciens strain 12B is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, allowing it to endure adverse environmental conditions. This strain is classified as an aerobic organism, thriving in the presence of oxygen, and is predominantly found in soil habitats. As a member of the Bacillus genus, B. amyloliquefaciens strain 12B possesses characteristics typical of soil-dwelling bacteria, including a robust capacity for nutrient cycling and interactions with plant roots. Its ability to form spores is particularly advantageous in soil environments where nutrient availability can fluctuate and moisture levels may be inconsistent. The sporulation process enables the bacterium to survive periods of nutrient scarcity and desiccation, thus ensuring its persistence in the soil ecosystem. The ecological role of B. amyloliquefaciens strain 12B may extend to promoting plant health, as members of this species are known for their beneficial effects on plant growth and disease suppression. This trait could be attributed to the production of various bioactive compounds, although specific details regarding such interactions for strain 12B remain to be elucidated. The presence of this strain in soil ecosystems highlights the importance of aerobic, sporulating bacteria in maintaining soil health and influencing plant-soil interactions, underscoring their potential utility in sustainable agriculture practices.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyBacillaceae
GenusBacillus
SpeciesBacillus amyloliquefaciens
Strainstrain 12B

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Bacillus amyloliquefaciens strain 12B
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacillus amyloliquefaciens strain 12B


Gene Summary

Adenine Count

2080385 bp

Thymine Count

2007017 bp

Guanine Count

1789163 bp

Cytosine Count

1720192 bp

Genome Length

7596758 bp

Protein-coding Genes

7873 genes

Non-Coding Genes

229 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+923367 - 923379Not Available
Mdmc o-methyltransferaseUZ38_04270Not Available+936454 - 93710725073.2
peptidase u32UZ38_04275Not Available+937114 - 93804335142.8
proteaseUZ38_04280Not Available+938061 - 93932947408.5
uridine kinaseUZ38_04285Not Available+939336 - 93996824396.5
IntegraseUZ38_04290Not Available-940033 - 94119345186.7
hypothetical proteinUZ38_04295Not Available-941199 - 9414539781.12
Helix-turn-helix transcriptional regulatorUZ38_04300Not Available+941500 - 94268146472.8
Immunity repressorUZ38_04305Not Available-943053 - 94344214912.5
Helix-turn-helix transcriptional regulatorUZ38_04310Not Available+943631 - 9438408001.8

Displaying genes 1 – 10 of 464 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

386 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 386 metabolites