Tropicimonas sediminicola strain DSM 29339

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Tropicimonas

Description

Tropicimonas sediminicola strain DSM 29339 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics, thriving optimally at a temperature of 37.0°C. The Gram-negative nature of this strain indicates the presence of a thin peptidoglycan layer and an outer membrane that may contribute to its environmental resilience and adaptability. The rod shape is a common morphological trait among various bacteria, which often influences their ecological roles and interactions within microbial communities. Given its aerobic requirement, T. sediminicola is likely to inhabit environments rich in oxygen, which may include surface waters, sediment layers, or other oxygenated habitats. The optimal growth temperature of 37.0°C suggests a preference for warm environments, potentially aligning with conditions found in human-associated or thermophilic ecosystems. Understanding the specific ecological niches occupied by T. sediminicola could provide insights into its role in biogeochemical cycling, particularly in sediment environments where aerobic bacteria contribute to the degradation of organic matter and nutrient cycling. Research on this strain may further illuminate its interactions with other microorganisms and its potential contributions to sedimentary ecosystems, highlighting the significance of aerobic bacteria in maintaining environmental health and balance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusTropicimonas
SpeciesTropicimonas sediminicola
Strainstrain DSM 29339

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tropicimonas sediminicola strain DSM 29339


Gene Summary

Adenine Count

869409 bp

Thymine Count

870408 bp

Guanine Count

1713070 bp

Cytosine Count

1721333 bp

Genome Length

5174220 bp

Protein-coding Genes

4782 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Serine acetyltransferaseSAMN05421757_10292Not Available-1013274 - 101408928828.8
Ribonuclease iiiSAMN05421757_10293Not Available-1014188 - 101489824464.1
Tail proteinSAMN05421757_10294Not Available-1014891 - 1018817141990.0
Phage cell wall peptidaseSAMN05421757_10295Not Available-1018817 - 101929617298.7
Minor tail proteinSAMN05421757_10296Not Available-1019289 - 102018831938.3
Tail proteinSAMN05421757_10297Not Available-1020188 - 102082022872.8
Tail tape measure proteinSAMN05421757_10298Not Available-1020842 - 102150422269.7
phage conserved hypothetical proteinSAMN05421757_10299Not Available-1021494 - 10216917076.63
phage tail tube protein, gta-gp10SAMN05421757_102100Not Available-1021696 - 102201910896.0
Gene transfer aget (gta) orfg9-like phage major tail proteinSAMN05421757_102101Not Available-1022023 - 102243614397.9

Displaying genes 1 – 10 of 4854 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites