Pedobacter caeni strain DSM 16990

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter caeni strain DSM 16990 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for moderately warm environments. As a member of the genus Pedobacter, it contributes to the diverse microbial communities found in various ecosystems, particularly those associated with soil and water environments. The aerobic requirement of Pedobacter caeni suggests that it plays a role in processes that involve the oxidation of organic compounds, potentially contributing to nutrient cycling in its habitat. Its ability to thrive at a specific temperature range may also indicate its adaptation to particular environmental niches, which could be key to understanding its functional roles in microbial communities. The non-spore-forming characteristic of this strain implies that it may rely on other survival strategies in adverse conditions, such as forming biofilms or utilizing metabolic plasticity to respond to changes in nutrient availability or other environmental stresses. This adaptability may enhance its ecological resilience, allowing it to maintain its presence in fluctuating habitats. Further studies could reveal additional insights into its interactions with other microorganisms and its contributions to biogeochemical processes in its native environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter caeni
Strainstrain DSM 16990

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter caeni strain DSM 16990


Gene Summary

Adenine Count

2294423 bp

Thymine Count

2291506 bp

Guanine Count

1650302 bp

Cytosine Count

1590094 bp

Genome Length

7828785 bp

Protein-coding Genes

6685 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
conserved repeat domain-containing protein/gliding motility-associated c-terminal domain-containing proteinSAMN04488522_1011Not AvailablePositive1 - 279699906.6
23s ribosomal rna . bacterial lsuNot AvailableNot AvailablePositive1 - 133618.01
5s ribosomal rna . bacterial tsuNot AvailableNot AvailablePositive165 - 27618.01
5s ribosomal rna . bacterial tsuNot AvailableNot AvailablePositive388 - 49918.01
5s ribosomal rna . bacterial tsuNot AvailableNot AvailablePositive2165 - 224018.01
5s ribosomal rna . bacterial tsuNot AvailableNot AvailablePositive2406 - 247518.01
type ix secretion system membrane protein, porp/sprf familySAMN04488522_1012Not AvailablePositive2805 - 380336955.9
hypothetical proteinSAMN04488522_1013Not AvailableNegative3814 - 429318173.6
hypothetical proteinSAMN04488522_1014Not AvailablePositive4484 - 491516736.1
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenaseSAMN04488522_1015Not AvailableNegative4925 - 629849743.6

Displaying genes 1 – 10 of 6748 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.