Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter caeni |
| Strain | strain DSM 16990 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2294423 bp
Thymine Count
2291506 bp
Guanine Count
1650302 bp
Cytosine Count
1590094 bp
Genome Length
7828785 bp
Protein-coding Genes
6685 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| conserved repeat domain-containing protein/gliding motility-associated c-terminal domain-containing protein | SAMN04488522_1011 | Not Available | + | 1 - 2796 | 99906.6 |
| 23s ribosomal rna . bacterial lsu | Not Available | Not Available | + | 1 - 1336 | 18.01 |
| 5s ribosomal rna . bacterial tsu | Not Available | Not Available | + | 165 - 276 | 18.01 |
| 5s ribosomal rna . bacterial tsu | Not Available | Not Available | + | 388 - 499 | 18.01 |
| 5s ribosomal rna . bacterial tsu | Not Available | Not Available | + | 2165 - 2240 | 18.01 |
| 5s ribosomal rna . bacterial tsu | Not Available | Not Available | + | 2406 - 2475 | 18.01 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04488522_1012 | Not Available | + | 2805 - 3803 | 36955.9 |
| hypothetical protein | SAMN04488522_1013 | Not Available | - | 3814 - 4293 | 18173.6 |
| hypothetical protein | SAMN04488522_1014 | Not Available | + | 4484 - 4915 | 16736.1 |
| succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase | SAMN04488522_1015 | Not Available | - | 4925 - 6298 | 49743.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
