Tropicimonas isoalkanivorans strain DSM 19548

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Tropicimonas

Description

Tropicimonas isoalkanivorans strain DSM 19548 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 37.0°C and is obligately aerobic. This strain is characterized by its ability to utilize isoalkanes as a carbon source, which suggests a specialized metabolic pathway adapted for the degradation of these compounds. The Gram-negative classification indicates that this microbe possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the environment and other microorganisms. Its rod shape is indicative of a common morphology observed in many aerobic bacteria, potentially facilitating efficient nutrient uptake and motility in its ecological niche. Being obligately aerobic, T. isoalkanivorans relies on oxygen for its metabolic processes, which may limit its habitat to oxygen-rich environments. The optimal growth temperature of 37.0°C aligns with the thermal preferences of many mesophilic microorganisms, suggesting that it may inhabit environments with moderate temperature ranges, possibly including those influenced by human activity or organic matter decomposition. In summary, T. isoalkanivorans strain DSM 19548 represents a specialized group of bacteria that not only contributes to the biogeochemical cycling of hydrocarbons but also highlights the ecological roles of aerobic microorganisms in the degradation of specific environmental pollutants, particularly isoalkanes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusTropicimonas
SpeciesTropicimonas isoalkanivorans
Strainstrain DSM 19548

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tropicimonas isoalkanivorans strain DSM 19548


Gene Summary

Adenine Count

883330 bp

Thymine Count

875776 bp

Guanine Count

1590237 bp

Cytosine Count

1626123 bp

Genome Length

4976641 bp

Protein-coding Genes

4685 genes

Non-Coding Genes

175 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
transposaseSAMN04488094_1463Not Available+4966765 - 496833658323.5
iclr helix-turn-helix domain-containing proteinSAMN04488094_1471Not Available+4968593 - 496887110194.3
transcriptional regulator, laci familySAMN04488094_1472Not Available+4969045 - 497007337428.7
hypothetical proteinSAMN04488094_1481Not Available+4970510 - 497139132575.6
toxin pare1/3/4SAMN04488094_1482Not Available-4971589 - 497187910740.0
antitoxin pard1/3/4SAMN04488094_1483Not Available-4971883 - 49721469643.51
protein of unknown functionSAMN04488094_1491Not Available-4972686 - 497387645442.5
transposase (or an inactivated derivative)SAMN04488094_1501Not Available-4974074 - 497527044643.5
n-acylmannosamine kinaseSAMN04488094_1511Not Available-4975416 - 497615124650.5
putative n-acetylmannosamine-6-phosphate epimeraseSAMN04488094_1512Not Available-4976141 - 497664117471.4

Displaying genes 4851 – 4860 of 4860 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites