Algoriphagus aquimarinus strain DSM 23399

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cyclobacteriaceae

Genus

Algoriphagus

Description

Algoriphagus aquimarinus strain DSM 23399 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This strain is part of the genus Algoriphagus, which is characterized by its adaptation to marine environments. The Gram-negative cell wall structure of A. aquimarinus is indicative of its potential to exhibit diverse metabolic pathways, allowing it to utilize various organic compounds present in its aquatic habitat. As an aerobic organism, A. aquimarinus requires oxygen for its metabolic processes, which may influence its ecological niche within the marine microbiome. The optimal temperature of 25.0°C suggests that this strain is well-suited for temperate marine conditions, potentially providing insights into its role in nutrient cycling and organic matter decomposition in oceanic ecosystems. Further studies on the specific metabolic capabilities of A. aquimarinus strain DSM 23399 could reveal its contributions to biogeochemical processes, particularly in the breakdown of complex organic materials in marine environments. Understanding the functional traits of this bacterium may enhance our knowledge of microbial community dynamics and the role of marine bacteria in maintaining ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCyclobacteriaceae
GenusAlgoriphagus
SpeciesAlgoriphagus aquimarinus
Strainstrain DSM 23399

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Algoriphagus aquimarinus strain DSM 23399


Gene Summary

Adenine Count

1527282 bp

Thymine Count

1526775 bp

Guanine Count

1025883 bp

Cytosine Count

1033579 bp

Genome Length

5119527 bp

Protein-coding Genes

4377 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
integrase core domain-containing proteinSAMN04489723_1011Not Available+1 - 27510655.6
23s ribosomal rna . bacterial lsuNot AvailableNot Available+1 - 221218.01
16s ribosomal rna . bacterial ssuNot AvailableNot Available+31 - 155518.01
sugar phosphate isomerase/epimeraseSAMN04489723_1012Not Available-556 - 144333197.0
sugar lactone lactonase yvreSAMN04489723_1013Not Available-1470 - 234833461.0
sugar phosphate isomerase/epimeraseSAMN04489723_1014Not Available-2459 - 334633939.4
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN04489723_1015Not Available-3371 - 416828644.5
l-iditol 2-dehydrogenaseSAMN04489723_1016Not Available-4170 - 520737071.6
3-hexulose-6-phosphate synthase / 6-phospho-3-hexuloisomeraseSAMN04489723_1017Not Available-5220 - 591824641.0
membrane dipeptidaseSAMN04489723_1018Not Available-6259 - 732939259.5

Displaying genes 1 – 10 of 4417 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites