Bacteroides xylanisolvens SD CC 1b

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides xylanisolvens SD CC 1b is a Gram-negative, anaerobic bacterium characterized by its ability to thrive in oxygen-depleted environments. This species is notable for its metabolic capabilities, particularly its capacity to degrade xylose, a pentose sugar commonly found in plant biomass. As a member of the Bacteroides genus, B. xylanisolvens plays a significant role in the breakdown of complex carbohydrates in the gut microbiota, contributing to the fermentation processes that produce short-chain fatty acids beneficial for host health. The anaerobic nature of B. xylanisolvens suggests that it is well-adapted to the intestinal environment, where oxygen levels are low, allowing it to coexist with other anaerobic organisms. The metabolic pathways of B. xylanisolvens may also have implications for the development of biotechnological applications, particularly in the context of biomass conversion and sustainable biofuel production, where the efficient degradation of plant polysaccharides is essential. Overall, Bacteroides xylanisolvens SD CC 1b exemplifies the intricate interactions within the microbiome, showcasing how specific anaerobic bacteria can contribute to the overall metabolic landscape and enhance the utilization of dietary fibers in the gastrointestinal tract. This capacity for xylose degradation highlights its potential importance in supporting host nutrition and maintaining gut homeostasis.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides xylanisolvens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides xylanisolvens SD CC 1b


Gene Summary

Adenine Count

1860430 bp

Thymine Count

1901289 bp

Guanine Count

1398603 bp

Cytosine Count

1323709 bp

Genome Length

6484037 bp

Protein-coding Genes

5479 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Major capsid proteinBN890_14590Not Available-1651586 - 165316358227.1
1_nc_021802: phage prohead protease proteinBN890_14600Not Available-1653181 - 165424239917.1
Portal proteinBN890_14610Not Available-1654196 - 165564154427.5
Terminase large subunitBN890_14620Not Available-1655768 - 165778376703.1
Putative terminase small subunitBN890_14630Not Available-1657845 - 165838720780.7
Nucleotide-sugar epimeraseBN890_14640Not Available-1658480 - 165928930524.7
Putative radical sam domain proteinBN890_14650Not Available-1659360 - 166027735423.4
Hypothetical proteinBN890_14660Not Available-1660289 - 166072016473.4
hypothetical proteinBN890_14670Not Available-1661009 - 16612368460.95
hypothetical proteinBN890_14680Not Available-1661258 - 166167415866.9

Displaying genes 1 – 10 of 284 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

259 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 259 metabolites