Bacteroides pyogenes DSM 20611 = JCM 6294

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides pyogenes DSM 20611 (also known as JCM 6294) is a Gram-negative bacterium belonging to the genus Bacteroides, which is noted for its role in the human microbiome and its importance in anaerobic digestion. This species is part of a diverse group of bacteria that are predominantly found in the gastrointestinal tract of humans and animals, where they contribute significantly to the breakdown of complex carbohydrates and proteins. Bacteroides pyogenes exhibits the characteristic features of Gram-negative bacteria, including a thin peptidoglycan layer surrounded by an outer membrane, which plays a crucial role in its resistance to certain antibiotics and environmental stresses. While the specific metabolic pathways and ecological interactions of Bacteroides pyogenes are not detailed here, its presence in the gut microbiota suggests that it may participate in symbiotic relationships with host organisms, potentially influencing nutrient absorption and immune system modulation. Furthermore, members of the Bacteroides genus are known to produce various enzymes that facilitate the fermentation of dietary fibers, thereby contributing to energy metabolism in the host. The ecological role of Bacteroides pyogenes, similar to other Bacteroides species, likely extends to maintaining gut homeostasis, highlighting the importance of this microbe in both health and disease contexts. Overall, Bacteroides pyogenes exemplifies the complexity of microbial ecosystems and the critical functions they perform in supporting host physiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides pyogenes
StrainDSM 20611 = JCM 6294

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides pyogenes DSM 20611 = JCM 6294


Gene Summary

Adenine Count

915207 bp

Thymine Count

932645 bp

Guanine Count

799478 bp

Cytosine Count

757513 bp

Genome Length

3404843 bp

Protein-coding Genes

3358 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+852396 - 852407Not Available
3_nc_021792: site specific recombinase, tyrosineJCM6294_1052Not Available-852636 - 85379345057.6
hypothetical proteinJCM6294_1053Not Available-853897 - 85419010964.5
hypothetical proteinJCM6294_1054Not Available-854187 - 85463316994.3
hypothetical proteinJCM6294_1055Not Available-854620 - 8548147336.64
hypothetical proteinJCM6294_1056Not Available-854817 - 85562030242.8
hypothetical proteinJCM6294_1057Not Available+855655 - 8558828778.65
hypothetical proteinJCM6294_1058Not Available+855879 - 8560466741.89
hypothetical proteinJCM6294_1059Not Available+856078 - 8562908165.87
hypothetical proteinJCM6294_1060Not Available-856406 - 8566549348.6

Displaying genes 1 – 10 of 3446 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

362 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 362 metabolites