[Clostridium] symbiosum ATCC 14940

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Otoolea

Description

[Clostridium] symbiosum ATCC 14940 is a Gram-negative bacterium that belongs to the Clostridia class, which is primarily characterized by its anaerobic metabolism. This organism is notable for its role in various microbial ecosystems, particularly in symbiotic relationships with other organisms. The Gram-negative classification indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a trait that may influence its interactions within its ecological niche. The metabolism of [C. symbiosum] is expected to be anaerobic, aligning with the general metabolic characteristics of clostridia, which typically thrive in low-oxygen environments. While specific metabolic pathways and substrates utilized by this strain are not detailed here, Clostridium species are known for their ability to ferment a variety of organic compounds, potentially contributing to nutrient cycling in their habitats. The strain ATCC 14940 is preserved in culture collections, providing a valuable resource for research into its physiological and ecological properties. Understanding the functional roles of [C. symbiosum] in microbial communities may provide insights into the complex interactions that underpin symbiotic relationships in various environments, including the gut microbiomes of host organisms. This highlights the importance of anaerobic bacteria like [C. symbiosum] in maintaining ecological balance and promoting health in their respective ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusOtoolea
Species[Clostridium] symbiosum
StrainATCC 14940

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

[Clostridium] symbiosum ATCC 14940


Gene Summary

Adenine Count

1266800 bp

Thymine Count

1252112 bp

Guanine Count

1158831 bp

Cytosine Count

1132932 bp

Genome Length

4810675 bp

Protein-coding Genes

4927 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Atp-dependent clp protease atp-binding subunitCLOSYM_00740Not Available+731922 - 73442093491.8
hypothetical proteinCLOSYM_00741Not Available+734486 - 73489915272.0
Putative replication protein repbCLOSYM_00742Not Available+735083 - 73636346391.7
Trna,type:trp,anti_codon:cca;Not AvailableNot Available+736512 - 736585Not Available
IntegraseCLOSYM_00744Not Available-736725 - 73806551525.3
Hypothetical proteinCLOSYM_00745Not Available-738126 - 73857816963.4
Hypothetical proteinCLOSYM_00746Not Available-738600 - 7388007590.7
Hypothetical proteinCLOSYM_00747Not Available-738813 - 73927717789.2
Helix-turn-helix domain-containing proteinCLOSYM_00748Not Available-739289 - 73980719874.7
Toxin-antitoxin system, antitoxin component, xre family proteinCLOSYM_00749Not Available+739886 - 74017610933.5

Displaying genes 1 – 10 of 5043 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

163 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00030862-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphateC34H64NO12PChemical structure of 2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphateNot available
Average709.8452Da
Monoisotopic709.416613029Da
BASm00032855-methyltetrahydropteroyltri-L-glutamateC30H35N9O12Chemical structure of 5-methyltetrahydropteroyltri-L-glutamateNot available
Average713.663Da
Monoisotopic713.2427119Da
BASm0003308N(2)-succinyl-L-arginineC10H17N4O5Chemical structure of N(2)-succinyl-L-arginineNot available
Average273.27Da
Monoisotopic273.120443243Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm0003692N-succinyl-L-glutamateC9H10NO7Chemical structure of N-succinyl-L-glutamateNot available
Average244.181Da
Monoisotopic244.047372406Da
BASm0003763(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateC11H12NO6PChemical structure of (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateNot available
Average285.1898Da
Monoisotopic285.0402236Da
BASm0004118UDP-3-O-[(3R)-3-hydroxytetradecanoyl]-N-acetyl-alpha-D-glucosamineC31H51N3O19P2Chemical structure of UDP-3-O-[(3R)-3-hydroxytetradecanoyl]-N-acetyl-alpha-D-glucosamineNot available
Average831.7Da
Monoisotopic831.26029759Da

Displaying 1–10 of 163 metabolites