[Clostridium] symbiosum WAL-14163

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Otoolea

Description

[Clostridium] symbiosum WAL-14163 is a Gram-negative bacterium belonging to the genus Clostridium, which is notable for its anaerobic metabolic capabilities. This strain is characterized by its ability to thrive in oxygen-deprived environments, a trait that is typical of many clostridia. While specific metabolic pathways and substrate utilization have not been detailed for this strain, members of the Clostridium genus are often associated with fermentation processes and the production of various short-chain fatty acids. The Gram-negative nature of [Clostridium] symbiosum WAL-14163 indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature that may influence its interactions with other microorganisms in its environment. This structural characteristic also has implications for the bacterium's resistance to certain antibiotics and its ability to evade the host immune system, although these aspects require further investigation to fully understand their relevance to this specific strain. In broader ecological contexts, the presence of [Clostridium] symbiosum WAL-14163 may contribute to microbial community dynamics, particularly in anaerobic environments such as the gastrointestinal tract of various hosts. The interplay between this bacterium and other gut microbiota could potentially enhance nutrient availability or influence metabolic health, highlighting the importance of anaerobic bacteria in maintaining gut homeostasis. Further research into this strain's specific roles and interactions within microbial communities could yield valuable insights into its ecological significance.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusOtoolea
Species[Clostridium] symbiosum
StrainWAL-14163

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

[Clostridium] symbiosum WAL-14163


Gene Summary

Adenine Count

1384672 bp

Thymine Count

1392189 bp

Guanine Count

1266535 bp

Cytosine Count

1268660 bp

Genome Length

5312064 bp

Protein-coding Genes

4474 genes

Non-Coding Genes

297 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1426191 - 1426203Not Available
Putative site-specific recombinaseHMPREF9474_01192Not Available-1432271 - 143359951961.6
Site-specific recombinaseHMPREF9474_01193Not Available-1433544 - 143480947467.7
hypothetical proteinHMPREF9474_01194Not Available-1434806 - 143521615789.8
N-acetylmuramoyl-l-alanine amidaseHMPREF9474_01195Not Available-1435390 - 143688354311.0
Phage holinHMPREF9474_01196Not Available-1436870 - 143728314889.5
hypothetical proteinHMPREF9474_01197Not Available-1437380 - 143878351583.1
Prophage proteinHMPREF9474_01198Not Available-1438794 - 144062066499.3
acetyltransferaseHMPREF9474_01199Not Available-1440711 - 144115716944.9
hypothetical proteinHMPREF9474_01200Not Available-1441207 - 144173719884.8

Displaying genes 1 – 10 of 4771 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

100 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002198beta-D-ribofuranoseC5H10O5Chemical structure of beta-D-ribofuranose50-69-1
Average150.1299Da
Monoisotopic150.05282343Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00030862-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphateC34H64NO12PChemical structure of 2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphateNot available
Average709.8452Da
Monoisotopic709.416613029Da
BASm00032855-methyltetrahydropteroyltri-L-glutamateC30H35N9O12Chemical structure of 5-methyltetrahydropteroyltri-L-glutamateNot available
Average713.663Da
Monoisotopic713.2427119Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da

Displaying 1–10 of 100 metabolites