Escherichia coli DEC1D

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli DEC1D is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is characteristic of many members of the Enterobacteriaceae family. E. coli DEC1D is optimally adapted to a temperature of 37.0°C, aligning with the average body temperature of warm-blooded hosts, suggesting a close association with host organisms. The habitat of E. coli DEC1D is primarily host-associated, pointing to its likely role as a commensal organism within the gastrointestinal tract of mammals. The ability to reside within a host context may confer advantages in terms of nutrient acquisition and survival, while also potentially impacting the host's microbiome dynamics. The facultative anaerobic nature of E. coli DEC1D allows it to utilize various metabolic pathways depending on the availability of oxygen, enabling it to occupy diverse niches within the host. This metabolic flexibility may contribute to its persistence and adaptability in complex microbial communities. Understanding the specific ecological roles and interactions of E. coli DEC1D within its host environment can provide insights into its influence on host health and the overall microbial ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainDEC1D

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli DEC1D
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli DEC1D


Gene Summary

Adenine Count

1277049 bp

Thymine Count

1272649 bp

Guanine Count

1306885 bp

Cytosine Count

1302830 bp

Genome Length

5159414 bp

Protein-coding Genes

4830 genes

Non-Coding Genes

627 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative lom-like outer membrane proteinECDEC1D_5252Not Available+5635 - 623421788.1
Putative tail fiber proteinECDEC1D_5253Not Available+6386 - 769944021.0
Trna-thr;Not AvailableNot Available+7376 - 7451Not Available
Trna-tyr;Not AvailableNot Available+7460 - 7544Not Available
Trna-gly;Not AvailableNot Available+7661 - 7735Not Available
Tail proteinECDEC1D_5254Not Available+7701 - 797010064.3
Trna-phe;Not AvailableNot Available+7702 - 7777Not Available
Trna-thr;Not AvailableNot Available+7742 - 7817Not Available
Hypothetical proteinECDEC1D_5255Not Available+8191 - 873320591.4
Nlea4795 proteinECDEC1D_5256Not Available-9215 - 1053747480.9

Displaying genes 1 – 10 of 5457 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

298 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 298 metabolites