Shigella flexneri VA-6

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella flexneri VA-6 is a nonsporulating, Gram-negative rod-shaped bacterium that typically occurs in pairs or as single cells. This microbe is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments, although its optimal growth temperature is around 37.0°C. As a chemoorganotroph, S. flexneri VA-6 derives its energy from organic compounds, which reflects its adaptation to a host-associated habitat where it likely interacts with various organic substrates found within the host organism. This strain, like other members of the Shigella genus, is associated with pathogenicity in humans, but specific details regarding its virulence factors or clinical implications are not provided here. The ability of S. flexneri VA-6 to thrive in the human gastrointestinal tract highlights its role in microbial community dynamics, as it may influence the composition and function of gut microbiota during infection. Furthermore, its facultative anaerobic nature suggests it could adapt to varying oxygen levels within host tissues, potentially impacting its survival and interaction with the immune system. Understanding the ecological niche of S. flexneri VA-6 may provide insights into its evolutionary adaptations within the host environment and its potential implications for human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella flexneri
StrainVA-6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shigella flexneri VA-6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs-Singles
SporulationNonsporulating
Energy source Chemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella flexneri VA-6


Gene Summary

Adenine Count

1149492 bp

Thymine Count

1150111 bp

Guanine Count

1190737 bp

Cytosine Count

1188777 bp

Genome Length

4679117 bp

Protein-coding Genes

4808 genes

Non-Coding Genes

429 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Head assembly proteinSFVA6_0588Not Available+622853 - 62330817414.9
Injection proteinSFVA6_0589Not Available+623311 - 62400323666.6
AttrNot AvailableNot Available+623905 - 623917Not Available
Dna injection proteinSFVA6_0590Not Available+624013 - 62439713451.7
Phage integrase family site-specific recombinaseSFVA6_0591Not Available-624398 - 6245787030.66
AttlNot AvailableNot Available+624850 - 624861Not Available
Hypothetical proteinSFVA6_0592Not Available-625300 - 62560512119.4
Hypothetical proteinSFVA6_0593Not Available-625605 - 62596113444.9
Hypothetical proteinSFVA6_0594Not Available-625958 - 6261527279.89
Is1 transposase bSFVA6_0595Not Available-626189 - 62669219800.0

Displaying genes 21 – 30 of 5237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites