Shigella flexneri VA-6

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella flexneri VA-6 is a nonsporulating, Gram-negative rod-shaped bacterium that typically occurs in pairs or as single cells. This microbe is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments, although its optimal growth temperature is around 37.0°C. As a chemoorganotroph, S. flexneri VA-6 derives its energy from organic compounds, which reflects its adaptation to a host-associated habitat where it likely interacts with various organic substrates found within the host organism. This strain, like other members of the Shigella genus, is associated with pathogenicity in humans, but specific details regarding its virulence factors or clinical implications are not provided here. The ability of S. flexneri VA-6 to thrive in the human gastrointestinal tract highlights its role in microbial community dynamics, as it may influence the composition and function of gut microbiota during infection. Furthermore, its facultative anaerobic nature suggests it could adapt to varying oxygen levels within host tissues, potentially impacting its survival and interaction with the immune system. Understanding the ecological niche of S. flexneri VA-6 may provide insights into its evolutionary adaptations within the host environment and its potential implications for human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella flexneri
StrainVA-6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shigella flexneri VA-6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs-Singles
SporulationNonsporulating
Energy source Chemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella flexneri VA-6


Gene Summary

Adenine Count

1149492 bp

Thymine Count

1150111 bp

Guanine Count

1190737 bp

Cytosine Count

1188777 bp

Genome Length

4679117 bp

Protein-coding Genes

4808 genes

Non-Coding Genes

429 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Holliday-junction resolvaseSFVA6_0578Not Available+617168 - 61753014052.0
Hypothetical proteinSFVA6_0579Not Available+617712 - 61833522474.1
HolinSFVA6_0580Not Available+619194 - 6193706200.52
LysozymeSFVA6_0581Not Available+619357 - 61983017741.1
EndopeptidaseSFVA6_0582Not Available+619827 - 62029417054.5
Orf45SFVA6_0583Not Available+620813 - 62114512363.3
hypothetical proteinSFVA6_0584Not Available-621155 - 6212985254.3
Duf2560 family proteinSFVA6_0585Not Available+621402 - 6215304829.76
Issod1, transposase orfaSFVA6_0586Not Available+621587 - 62188911510.0
Putative transposase orfbSFVA6_0587Not Available+621916 - 62275532366.6

Displaying genes 11 – 20 of 5237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites